Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_L16
         (652 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    24   1.1  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    24   1.5  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   3.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   3.4  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   3.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.5  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   5.9  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +2

Query: 140 PPSRKPSLRTRRAPTP 187
           PPSRK S R RR  TP
Sbjct: 400 PPSRKESGRRRRRRTP 415


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 386 ASIIYLKVRTRGGGSVAPKPPDGWAAN 466
           A++ Y+ + T  GGS    P   WA N
Sbjct: 92  ATLTYISLDTNRGGSPKLTPYPNWAQN 118


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 244 QSLYSFGVAEKCLLFLLSVRC 182
           Q L S+ V+  CLLFL+   C
Sbjct: 443 QLLDSYAVSGFCLLFLMFFEC 463


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 244 QSLYSFGVAEKCLLFLLSVRC 182
           Q L S+ V+  CLLFL+   C
Sbjct: 496 QLLDSYAVSGFCLLFLMFFEC 516


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 13/43 (30%), Positives = 16/43 (37%)
 Frame = +3

Query: 96  SNSNKQNGGSSTFSIRHHGSRLFEHGVPRHRTESRNNKHFSAT 224
           S  N   G S   S  HHGS+ +         E+  N   S T
Sbjct: 389 SGENNSRGHSGQSSSHHHGSKSWTQEDMDAALEALRNHDMSLT 431


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = +2

Query: 422  GGSVAPKPPDGWAANCPLPTPMGGSRSPKQGSLK 523
            G + A   P    AN P P   G    PK+G  +
Sbjct: 1008 GQAQAQAKPQSQEANKPKPATGGKGTRPKRGKYR 1041


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/21 (33%), Positives = 10/21 (47%)
 Frame = +3

Query: 177 PRHRTESRNNKHFSATPKEYN 239
           P H T    + H  ATP  ++
Sbjct: 414 PHHHTMGHGHSHIHATPHHHH 434


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,241
Number of Sequences: 438
Number of extensions: 4991
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)