Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_L13
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr 2... 194 7e-51
SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase |Schizosa... 180 1e-46
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy... 27 1.8
SPBC4B4.10c |mug77|atg5|autophagy associated protein Atg5 |Schiz... 26 4.1
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 26 4.1
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 26 5.5
SPCC569.03 |||DUF1773 family protein 4|Schizosaccharomyces pombe... 26 5.5
SPAC323.06c |uba5||NEDD8 activating enzyme |Schizosaccharomyces ... 25 7.2
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 25 9.5
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar... 25 9.5
>SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 439
Score = 194 bits (474), Expect = 7e-51
Identities = 96/161 (59%), Positives = 116/161 (72%), Gaps = 1/161 (0%)
Frame = +2
Query: 167 GNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNIKSEYHGKGVLTAIKNINELIAP 346
GNPTVEVDL TE G+ RA VPSGASTG+ EALE+RD K+++ GKGVL A+ N+N +IAP
Sbjct: 16 GNPTVEVDLTTETGIHRAIVPSGASTGIWEALEMRDGDKTKWGGKGVLKAVGNVNNIIAP 75
Query: 347 ELTKANLEVTQQREIDELMLKLDGTENKSKLGANAIXXXXXXXXXXXXXXXNVPLYKHLA 526
+ KANL+VT Q+ DE +LKLDGTENKSKLGANAI +PL+K++A
Sbjct: 76 AVVKANLDVTDQKAADEFLLKLDGTENKSKLGANAILGVSMAICRAGAAQKKLPLWKYIA 135
Query: 527 DLAG-NNDIVLPVPAFNVINGGSHAGNKLAMXEFMIFPTGA 646
+ G VLPVP+FNV+NGGSHAG LA EFMI PTGA
Sbjct: 136 ENFGTKGPYVLPVPSFNVLNGGSHAGGDLAFQEFMILPTGA 176
>SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 440
Score = 180 bits (439), Expect = 1e-46
Identities = 88/163 (53%), Positives = 112/163 (68%), Gaps = 1/163 (0%)
Frame = +2
Query: 167 GNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNIKSEYHGKGVLTAIKNINELIAP 346
GNPTVEV+L TELG FR+ VPSGASTG EA ELRDN K+++ GKGV A+ N+N +I P
Sbjct: 17 GNPTVEVELTTELGTFRSMVPSGASTGEWEAKELRDNDKNKWGGKGVTIAVHNVNNIIGP 76
Query: 347 ELTKANLEVTQQREIDELMLKLDGTENKSKLGANAIXXXXXXXXXXXXXXXNVPLYKHLA 526
L K+++++T QR IDE M+KLDGT +KSKLGAN+I +PLY+++
Sbjct: 77 ALVKSDIKITDQRGIDEFMIKLDGTNDKSKLGANSIVGVSMAVARAAAAFLKIPLYEYIG 136
Query: 527 DLAGNNDI-VLPVPAFNVINGGSHAGNKLAMXEFMIFPTGAST 652
LAG+ +PVP+FNV+NGG HAG LA EFMI P A T
Sbjct: 137 KLAGSKTTECIPVPSFNVLNGGRHAGGDLAFQEFMIMPIKAPT 179
>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 27.5 bits (58), Expect = 1.8
Identities = 24/79 (30%), Positives = 34/79 (43%)
Frame = +2
Query: 137 SRLVKSLTLAGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNIKSEYHGKGVLTA 316
S LV + G +VD ++A +ST LE R N + E V TA
Sbjct: 133 SLLVAGMDEKGPSLYQVDPSGTYFAWKATAIGKSSTAAKTFLEKRYNDELELDD-AVHTA 191
Query: 317 IKNINELIAPELTKANLEV 373
I + E ELT+ N+E+
Sbjct: 192 ILALKETFEGELTEDNIEI 210
>SPBC4B4.10c |mug77|atg5|autophagy associated protein Atg5
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 261
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 639 VGKIMNSCMASLFPACDPPLITLKAGTGRTISL 541
+G+ +N + LFP+CD LI G TI L
Sbjct: 204 LGEFLNKRLPDLFPSCDKFLIVKPVIHGITIFL 236
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -3
Query: 430 FVLSAIQLKHEFINLSLLGYFKVGFG 353
F +S+I+ KH++IN+ Y +G G
Sbjct: 113 FSISSIKTKHDYINIIKKHYVSLGVG 138
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1647
Score = 25.8 bits (54), Expect = 5.5
Identities = 18/77 (23%), Positives = 34/77 (44%)
Frame = +2
Query: 167 GNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNIKSEYHGKGVLTAIKNINELIAP 346
G P + ++ LG F + S S + ++ + + +E H + K +NE +A
Sbjct: 1109 GEPILTQQVIQNLGGFSSEEVSMVSRCIRSRTQIMNMLATEIHYAASVGQNKYLNEYVA- 1167
Query: 347 ELTKANLEVTQQREIDE 397
L + N E T E+ +
Sbjct: 1168 SLIRTN-EKTHSTELSQ 1183
>SPCC569.03 |||DUF1773 family protein 4|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 396
Score = 25.8 bits (54), Expect = 5.5
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +2
Query: 272 DNIKSEY-HGKGVLTAIKNINELIAPELTKANLEVTQQRE-IDELMLKLDGTENKSK 436
D++K E KG +T +KN + + E T EVT ++ I +L K+D + +++
Sbjct: 225 DSVKGEMAEMKGEMTIMKNDIDSVKGETTTLKGEVTAMKDSISQLDRKIDLLDQRTE 281
>SPAC323.06c |uba5||NEDD8 activating enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 500
Score = 25.4 bits (53), Expect = 7.2
Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = -2
Query: 269 SVQELHEHQWR-HQRVQLPGTSQALLPDQLPL*GCQRESKI*RALIDFITIFNTEXDFLK 93
+++E + W+ + +LP +L D + Q +S+ + + +F E +FL
Sbjct: 253 NIEEASSNSWKAFKEYKLPSNVYEVLHDTRCV-KIQEDSESFWIMAHCLKMFYDETEFLP 311
Query: 92 LSVILI*QNCTLQ 54
LS +L NC+ Q
Sbjct: 312 LSGLLPDMNCSTQ 324
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -3
Query: 358 FGKFRSNEFIDIFDCGQNSLAMIFTLDV-ISQFKSFMNTSGGTRGYSCPEQAKL 200
F + +EF +IF+C ++LA++ +S + +N +G + C AK+
Sbjct: 657 FVEILESEFPNIFECLVDNLALLHIFQFWMSNEVTSVNCTGIVLSFCCDNLAKI 710
>SPMIT.06 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 807
Score = 25.0 bits (52), Expect = 9.5
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Frame = +2
Query: 227 PSGASTGVHEALELRDNIKSEYHGKGVLTAIKNINEL--IAPELTKANLEVTQQREIDEL 400
P A+ +H+ E +N+KSE+ KG + A K +E + + KA E + I ++
Sbjct: 429 PILANIYLHQLDEFIENLKSEFDYKGPI-ARKRTSESRHLHYLMAKAKRENADSKTIRKI 487
Query: 401 MLKLDGTENK 430
+++ NK
Sbjct: 488 AIEMRNVPNK 497
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,456,244
Number of Sequences: 5004
Number of extensions: 42492
Number of successful extensions: 115
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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