Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_L13
(654 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29862| Best HMM Match : Enolase_N (HMM E-Value=6e-20) 100 9e-22
SB_17335| Best HMM Match : Enolase_C (HMM E-Value=0) 92 3e-19
SB_28893| Best HMM Match : Enolase_C (HMM E-Value=5.6e-07) 34 0.088
SB_27495| Best HMM Match : VWA (HMM E-Value=0) 31 0.82
SB_21143| Best HMM Match : Myosin_tail_1 (HMM E-Value=0.42) 29 4.4
SB_18551| Best HMM Match : RNA_pol_Rpc82 (HMM E-Value=0.69) 28 5.8
SB_42690| Best HMM Match : F5_F8_type_C (HMM E-Value=7.49695e-43) 28 7.6
SB_27203| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 28 7.6
SB_24382| Best HMM Match : F5_F8_type_C (HMM E-Value=4.90006e-41) 28 7.6
SB_9773| Best HMM Match : TPR_2 (HMM E-Value=3.2e-06) 28 7.6
>SB_29862| Best HMM Match : Enolase_N (HMM E-Value=6e-20)
Length = 115
Score = 100 bits (240), Expect = 9e-22
Identities = 46/75 (61%), Positives = 58/75 (77%)
Frame = +2
Query: 206 GLFRAAVPSGASTGVHEALELRDNIKSEYHGKGVLTAIKNINELIAPELTKANLEVTQQR 385
G FRAAVPSGASTG++EALELRD S++ GKGV A+ N+N +I P L N++VT Q
Sbjct: 40 GTFRAAVPSGASTGIYEALELRDKDASKFLGKGVSQAVNNVNTIIGPALVSKNVDVTAQE 99
Query: 386 EIDELMLKLDGTENK 430
+ID +ML+LDGTENK
Sbjct: 100 DIDNMMLQLDGTENK 114
>SB_17335| Best HMM Match : Enolase_C (HMM E-Value=0)
Length = 284
Score = 92.3 bits (219), Expect = 3e-19
Identities = 40/49 (81%), Positives = 45/49 (91%)
Frame = +2
Query: 503 VPLYKHLADLAGNNDIVLPVPAFNVINGGSHAGNKLAMXEFMIFPTGAS 649
VPLYK++A LAGNN ++LPVPAFNVINGGSHAGNKLAM EFM+ PTGAS
Sbjct: 26 VPLYKYIAGLAGNNQVILPVPAFNVINGGSHAGNKLAMQEFMLLPTGAS 74
>SB_28893| Best HMM Match : Enolase_C (HMM E-Value=5.6e-07)
Length = 133
Score = 34.3 bits (75), Expect = 0.088
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = +2
Query: 572 NVINGGSHAGNKLAMXEFMIFPTGAST 652
N++NGG+HA + + + EFMI P GA +
Sbjct: 2 NILNGGAHADSDVDIQEFMIAPIGAES 28
>SB_27495| Best HMM Match : VWA (HMM E-Value=0)
Length = 1064
Score = 31.1 bits (67), Expect = 0.82
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Frame = -3
Query: 454 DSISTQFGFVLSAIQLKHEFINLSLLGYFKVGFGKFRSNEFID-IFDCGQNSLAMIFTLD 278
+ + T F ++ +H F + GY + GF KFRS + +D + D + + +D
Sbjct: 633 EKLCTGFDVAERQLRKQHSFWFNDVCGYNQKGFRKFRSEQELDELLDKIEKTQDPQRRVD 692
Query: 277 VISQF--KSFMNTSGGTR 230
+F K F + GGTR
Sbjct: 693 KTFKFASKEFFSMEGGTR 710
>SB_21143| Best HMM Match : Myosin_tail_1 (HMM E-Value=0.42)
Length = 870
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +2
Query: 311 TAIKNINELIAPELTKANLEVTQQREIDELMLKLDGTENKS 433
TA KN+ + A ELT N + TQ+ + +L L TEN++
Sbjct: 679 TAKKNLEKARAAELTAVNQQATQREQ--QLTTLLQETENRN 717
>SB_18551| Best HMM Match : RNA_pol_Rpc82 (HMM E-Value=0.69)
Length = 348
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = +2
Query: 275 NIKSEYHGKGVLTAIKNINELIAPELTK--ANLEVTQQRE 388
N+K+E+ G+ AI ++ EL+ P + L++TQ R+
Sbjct: 219 NLKAEHGGEAAADAISDLQELVTPAEREMLMKLKITQARQ 258
>SB_42690| Best HMM Match : F5_F8_type_C (HMM E-Value=7.49695e-43)
Length = 257
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 142 ARQIFDSRWQPYSGS*SGNRAWLVPGSCT 228
A I+DSR+ PY +G+ W GS T
Sbjct: 30 ATTIYDSRYHPYYARLNGSPGWCRSGSST 58
>SB_27203| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 527
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 142 ARQIFDSRWQPYSGS*SGNRAWLVPGSCT 228
A I+DSR+ PY +G+ W GS T
Sbjct: 53 ATTIYDSRYHPYYARLNGSPGWCRSGSST 81
>SB_24382| Best HMM Match : F5_F8_type_C (HMM E-Value=4.90006e-41)
Length = 316
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 142 ARQIFDSRWQPYSGS*SGNRAWLVPGSCT 228
A I+DSR+ PY +G+ W GS T
Sbjct: 94 ATTIYDSRYHPYYARLNGSPGWCRSGSST 122
>SB_9773| Best HMM Match : TPR_2 (HMM E-Value=3.2e-06)
Length = 553
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +2
Query: 512 YKHLADLAGNNDIVLPVPAFNVING-GSHAGNKLAMXE 622
Y HL+ + +D+ LPV +N+ +G G G+ +A+ E
Sbjct: 268 YLHLSRVKDKSDLCLPVTVYNMASGAGFVVGDAIAIPE 305
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,316,549
Number of Sequences: 59808
Number of extensions: 319542
Number of successful extensions: 763
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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