Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_L13
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   6.0  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   6.0  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   7.9  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -1

Query: 579 ITLKAGTGRTISLFPAKSAKC-LYSGTF 499
           +T+KAG    +  FP  + +C L  G+F
Sbjct: 124 LTIKAGCPMNLENFPMDTQRCPLQFGSF 151


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -2

Query: 536 QPNQPSACTAE 504
           QPN+PS CT E
Sbjct: 5   QPNRPSYCTWE 15


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
          receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +3

Query: 3  LAVIAPATKSLYFAKPG 53
          L ++   T+S +FA+PG
Sbjct: 5  LLIVLGCTRSAHFARPG 21


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,045
Number of Sequences: 438
Number of extensions: 2900
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)