Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_L10
(621 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha... 173 2e-44
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar... 172 4e-44
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S... 29 0.72
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|... 27 2.9
SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces ... 26 3.8
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 26 3.8
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 26 3.8
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 26 5.1
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph... 25 6.7
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 25 6.7
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 25 8.8
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 25 8.8
>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 173 bits (420), Expect = 2e-44
Identities = 89/153 (58%), Positives = 106/153 (69%)
Frame = +3
Query: 162 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDA 341
R RGGN K+RALRLD+GNFSWGSE ++KTRII V Y+ SNNELVRT TL K+AIV +DA
Sbjct: 47 RVRGGNKKFRALRLDSGNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDA 106
Query: 342 TPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALXEQF 521
PFR WYE+HY + +G KG K T +S+ RK+ AR +KV+ AL QF
Sbjct: 107 APFRVWYETHYGILMG-SKGKKATSTP-----NPKSKHVQRKHSARLGDSKVDSALETQF 160
Query: 522 HTGRLLACVASRPXQCGRADGYILXGKELEFYL 620
GRL A V+SRP Q GR DGYIL G+EL FYL
Sbjct: 161 AAGRLYAVVSSRPGQSGRCDGYILEGEELHFYL 193
Score = 47.6 bits (108), Expect = 1e-06
Identities = 20/28 (71%), Positives = 24/28 (85%)
Frame = +2
Query: 71 KRAPIRKKRKYELGRPAANTRLGPQRIH 154
KRA RKKRK+ELGR +NTR+GP+RIH
Sbjct: 17 KRAQYRKKRKFELGRQPSNTRIGPKRIH 44
Score = 26.2 bits (55), Expect = 3.8
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +1
Query: 22 MGISRDHWHKRRATG 66
MGI+RD HKR ATG
Sbjct: 1 MGITRDSRHKRSATG 15
>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 172 bits (418), Expect = 4e-44
Identities = 89/153 (58%), Positives = 106/153 (69%)
Frame = +3
Query: 162 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDA 341
R RGGN K+RALRLD+GNFSWGSE ++KTRII V Y+ SNNELVRT TL K+AIV +DA
Sbjct: 47 RVRGGNKKFRALRLDSGNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDA 106
Query: 342 TPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALXEQF 521
PFR WYE+HY + +G KG K T +S+ RK+ AR +KV+ AL QF
Sbjct: 107 APFRVWYETHYGILMG-SKGKKATATP-----TPKSKHVQRKHSARLGDSKVDSALETQF 160
Query: 522 HTGRLLACVASRPXQCGRADGYILXGKELEFYL 620
GRL A V+SRP Q GR DGYIL G+EL FYL
Sbjct: 161 AAGRLYAVVSSRPGQSGRCDGYILEGEELHFYL 193
Score = 47.6 bits (108), Expect = 1e-06
Identities = 20/28 (71%), Positives = 24/28 (85%)
Frame = +2
Query: 71 KRAPIRKKRKYELGRPAANTRLGPQRIH 154
KRA RKKRK+ELGR +NTR+GP+RIH
Sbjct: 17 KRAQYRKKRKFELGRQPSNTRIGPKRIH 44
Score = 26.2 bits (55), Expect = 3.8
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +1
Query: 22 MGISRDHWHKRRATG 66
MGI+RD HKR ATG
Sbjct: 1 MGITRDSRHKRSATG 15
>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 28.7 bits (61), Expect = 0.72
Identities = 21/74 (28%), Positives = 36/74 (48%)
Frame = +3
Query: 144 SVSTPXRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNA 323
+V +P +R T R+L +G S S ++ +TR V +AS+N L+ + ++
Sbjct: 534 TVISPQPTRRSRTPIRSL---SGRSSVASSRNSSRTRSYSNVSSASSNSLISIISSKPSS 590
Query: 324 IVVVDATPFRQWYE 365
V TPF +E
Sbjct: 591 STVQRQTPFHSPFE 604
>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
Mts4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 26.6 bits (56), Expect = 2.9
Identities = 18/67 (26%), Positives = 29/67 (43%)
Frame = +3
Query: 135 SVLSVSTPXRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLV 314
SVL +S S+ + KYR + T WG E I+ + + E T L+
Sbjct: 128 SVLGMSYSNTSKHESLKYRLQGVTTDPSLWGHEYVRHLASEIEEEFASRQEEEAPTDDLM 187
Query: 315 KNAIVVV 335
+ A+ +V
Sbjct: 188 ELALTIV 194
>SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 655
Score = 26.2 bits (55), Expect = 3.8
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = -1
Query: 618 DRTRVLCLXRCNHRRDHTDXGDSPRKPANAPCGIALXE 505
D + CL R H+RD + + RK N G L E
Sbjct: 434 DANIIPCLLRSKHKRDKANPENKERKLVNNLLGAQLLE 471
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 26.2 bits (55), Expect = 3.8
Identities = 14/27 (51%), Positives = 15/27 (55%)
Frame = -1
Query: 87 RMGARFPAGGPSLMPVIPTNTHLSWVE 7
RM F L+PVI T THLS VE
Sbjct: 1196 RMSVDFSEKYTQLIPVITTYTHLSEVE 1222
>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 817
Score = 26.2 bits (55), Expect = 3.8
Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +3
Query: 222 WGSEC--STRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRK 395
WGS+ +K + +V+ +++ + +T L AT F + +S+Y +PL R+
Sbjct: 250 WGSQSYLQEKKAGLAEVLNISTSQQKPKTTALDYEVFRHEMATKFSSFADSYYPVPLDRE 309
Query: 396 K 398
+
Sbjct: 310 Q 310
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 25.8 bits (54), Expect = 5.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 361 YHCLNGVASTTTIAFLTRVFVRTNS 287
++C N V S T + + VFVR NS
Sbjct: 518 FYCSNEVLSLTALLSVPNVFVRPNS 542
>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
Phf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 538
Score = 25.4 bits (53), Expect = 6.7
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 283 LDALYTTSMIRVLRVEHSDPQEKLPVSRR 197
L+ + T S +V R H DP KLP RR
Sbjct: 193 LEGVKTKSGRKVHRPNHFDPLVKLPTRRR 221
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 25.4 bits (53), Expect = 6.7
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = -1
Query: 207 CPDAAHGT*YF--HHVNEXEWIR*GPSLVFAAGRPNSYFLFLRMGARFP 67
CPD + G Y V + ++R PS+++A ++ LF+R+ ++P
Sbjct: 307 CPDPSQGFNYCIREAVFQGYFVRPLPSIIWALFEFSAVALFIRLKMKYP 355
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 25.0 bits (52), Expect = 8.8
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 180 TKYRALRLDTGNFSWGSECSTRKTRI 257
T YRA+ LDTG+ E + K RI
Sbjct: 1133 TVYRAVNLDTGDLMAVKEVALHKPRI 1158
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 25.0 bits (52), Expect = 8.8
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = +3
Query: 81 PYARRGSMS*GVP--LQTPGSVLSVSTPXRSRGGNTKY 188
PY R ++ +P L G +LSV SRG TKY
Sbjct: 1174 PYNTRNFITFSIPRLLYEQGGILSVPGLNTSRGFETKY 1211
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,437,765
Number of Sequences: 5004
Number of extensions: 46520
Number of successful extensions: 128
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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