Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_L10
         (621 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40799-7|AAA81485.1|  208|Caenorhabditis elegans Ribosomal prote...   229   9e-61
U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis...    31   0.50 
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis...    31   0.50 
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis...    31   0.50 
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis...    31   0.50 
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis...    31   0.50 
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res...    31   0.50 
U88315-4|AAB42369.3|  778|Caenorhabditis elegans Hypothetical pr...    29   3.5  
L14745-8|AAA27923.1|  244|Caenorhabditis elegans Tetraspanin fam...    28   6.2  
AL117205-7|CAB55160.1|  293|Caenorhabditis elegans Hypothetical ...    28   6.2  

>U40799-7|AAA81485.1|  208|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 8 protein.
          Length = 208

 Score =  229 bits (561), Expect = 9e-61
 Identities = 106/153 (69%), Positives = 126/153 (82%)
 Frame = +3

Query: 162 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDA 341
           R+RGGN KYRALRLD+GNFSW SE +TRKTRI+D +YNA+NNELVRTKTLVK AI+ VDA
Sbjct: 47  RTRGGNEKYRALRLDSGNFSWASEQTTRKTRIVDTMYNATNNELVRTKTLVKGAIISVDA 106

Query: 342 TPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALXEQF 521
            PFRQWYE+HY LPL RKK AKL+E + AI+NKKRS  T +KY  RQ+ A V+  L EQF
Sbjct: 107 APFRQWYEAHYALPLARKKNAKLSEEDNAILNKKRSHHTMKKYTERQKTAAVDALLIEQF 166

Query: 522 HTGRLLACVASRPXQCGRADGYILXGKELEFYL 620
           +TGRLLA ++S P Q G+A+GYIL GKEL+FYL
Sbjct: 167 NTGRLLARISSSPGQVGQANGYILEGKELDFYL 199



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 17/29 (58%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
 Frame = +2

Query: 68  GKRAPI-RKKRKYELGRPAANTRLGPQRI 151
           G   P+  KKRK+ELGRPAANT++G  R+
Sbjct: 15  GATQPVPHKKRKFELGRPAANTKIGAHRV 43



 Score = 30.7 bits (66), Expect = 0.88
 Identities = 12/15 (80%), Positives = 12/15 (80%)
 Frame = +1

Query: 22 MGISRDHWHKRRATG 66
          MGISRD WHKR  TG
Sbjct: 1  MGISRDSWHKRYKTG 15


>U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug
           resistance related protein1 protein.
          Length = 1540

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +3

Query: 192 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 296
           A+++D G+F+WGS+   RK  + D+ +N    +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform e protein.
          Length = 1534

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +3

Query: 192 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 296
           A+++D G+F+WGS+   RK  + D+ +N    +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform c protein.
          Length = 1534

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +3

Query: 192 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 296
           A+++D G+F+WGS+   RK  + D+ +N    +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform b protein.
          Length = 1534

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +3

Query: 192 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 296
           A+++D G+F+WGS+   RK  + D+ +N    +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform a protein.
          Length = 1528

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +3

Query: 192 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 296
           A+++D G+F+WGS+   RK  + D+ +N    +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
           resistance-associatedprotein protein.
          Length = 1534

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +3

Query: 192 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 296
           A+++D G+F+WGS+   RK  + D+ +N    +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645


>U88315-4|AAB42369.3|  778|Caenorhabditis elegans Hypothetical
           protein C37H5.5 protein.
          Length = 778

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 15/42 (35%), Positives = 27/42 (64%)
 Frame = +3

Query: 390 RKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALXE 515
           +K G     A++  I K+++ KTA+KY  +++LA++E  L E
Sbjct: 424 KKSGKDALIAKKYQIKKEKASKTAKKY--KKQLARLEADLLE 463


>L14745-8|AAA27923.1|  244|Caenorhabditis elegans Tetraspanin family
           protein 1 protein.
          Length = 244

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = -3

Query: 295 TNSLLDALYTTSMIRVLRV 239
           TNSL+DA+YTT+ +  L++
Sbjct: 133 TNSLIDAMYTTNSVNDLKI 151


>AL117205-7|CAB55160.1|  293|Caenorhabditis elegans Hypothetical
           protein Y116A8A.8 protein.
          Length = 293

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 234 CSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQ 356
           CS +    I   ++A+NN ++  KT   N I     TPF Q
Sbjct: 51  CSIQNLMYIQKRFSANNNMIIALKTDTINEITESVCTPFEQ 91


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,799,551
Number of Sequences: 27780
Number of extensions: 274333
Number of successful extensions: 809
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)