Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_L09
         (543 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...    37   0.002
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2...    26   4.1  
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    25   5.5  
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    25   7.2  

>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score = 36.7 bits (81), Expect = 0.002
 Identities = 33/108 (30%), Positives = 41/108 (37%), Gaps = 1/108 (0%)
 Frame = +2

Query: 179 VFEQVGKAP-AANLPHVLRWYNQIASYTSAERKTWSQGTSPLXXXXXXXXXXXXXXXXXX 355
           VF+ VG AP  A  P+  RWY QIA+Y  A        T P                   
Sbjct: 37  VFKAVGVAPDTAKYPNGARWYKQIATYDLA--------TLPGTAKEVSAYGPEGAAAAEE 88

Query: 356 XXVDLFGSGXXXXXXXXXXXXXXXLKAYADKKSKKPALIAKSSILLDV 499
             +DLFGS                +  Y  KK+ KP  + KS + LDV
Sbjct: 89  DEIDLFGS-DEEEDPEAERIKAERVAEYNKKKAAKPKAVHKSLVTLDV 135



 Score = 34.7 bits (76), Expect = 0.009
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +1

Query: 97  SALNDLNQYLAEKSYVSGYTPSQAD 171
           + L  LN +L +KS++ GY PSQAD
Sbjct: 10  AGLKQLNDFLLDKSFIEGYEPSQAD 34



 Score = 26.6 bits (56), Expect = 2.4
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +1

Query: 499 QPWDDETDMKEME 537
           +PWDDET M E+E
Sbjct: 136 KPWDDETPMDELE 148


>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 474

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 18/50 (36%), Positives = 28/50 (56%)
 Frame = -3

Query: 271 AFSRSV*SNLIIPS*YVGKVSGRRLANLLKYVEHQLEKECIQTRSFSQLN 122
           AFS S  +  +IP+  +GK S R + N+      +L KE + T+ F+ LN
Sbjct: 321 AFSGSG-AKTVIPAKVIGKFSIRTVPNMESETVERLVKEHV-TKVFNSLN 368


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +3

Query: 303 PPVLNPRLPPQQRKTTMTT 359
           PPVL P LPP Q  T  T+
Sbjct: 449 PPVLLPTLPPIQTTTIQTS 467


>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 292 GALRPCFAFSRSV*SNLIIPS*YVGKVSGRRLANLLK 182
           G L     F  ++ + +I+PS  +G   GR +  LLK
Sbjct: 394 GLLLTSATFGAAIPTGIIVPSLAIGACIGRAVGTLLK 430


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,888,061
Number of Sequences: 5004
Number of extensions: 31691
Number of successful extensions: 87
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)