Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_L09
         (543 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59042| Best HMM Match : No HMM Matches (HMM E-Value=.)              65   4e-11
SB_52162| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   2e-04
SB_25408| Best HMM Match : ABC_tran (HMM E-Value=0)                    29   2.5  

>SB_59042| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 225

 Score = 64.9 bits (151), Expect = 4e-11
 Identities = 39/110 (35%), Positives = 50/110 (45%), Gaps = 3/110 (2%)
 Frame = +2

Query: 179 VFEQVGKAPAANLPHVLRWYNQIASYTSAERKTWSQGTSPLX---XXXXXXXXXXXXXXX 349
           VFE +  AP A+LPH LRWYN I SY   ++    +  S                     
Sbjct: 37  VFEALKSAPPASLPHALRWYNHIVSYGEGKQNFPGEKKSVESFGPAGAASEQKPAPADDN 96

Query: 350 XXXXVDLFGSGXXXXXXXXXXXXXXXLKAYADKKSKKPALIAKSSILLDV 499
               +DLFGS                LKAY +KK+KK  +IAKS+I+LDV
Sbjct: 97  DDDEIDLFGSDDEEEEKEAARIRQERLKAYEEKKAKKKPVIAKSNIMLDV 146



 Score = 36.3 bits (80), Expect = 0.016
 Identities = 14/25 (56%), Positives = 19/25 (76%)
 Frame = +1

Query: 97  SALNDLNQYLAEKSYVSGYTPSQAD 171
           + L+ LN +L E+SY+ GY PSQAD
Sbjct: 10  AGLSALNTFLTERSYIEGYVPSQAD 34



 Score = 30.7 bits (66), Expect = 0.80
 Identities = 11/13 (84%), Positives = 12/13 (92%)
 Frame = +1

Query: 499 QPWDDETDMKEME 537
           +PWDDETDM EME
Sbjct: 147 KPWDDETDMAEME 159


>SB_52162| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 81

 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 17/26 (65%), Positives = 19/26 (73%)
 Frame = +2

Query: 179 VFEQVGKAPAANLPHVLRWYNQIASY 256
           VFE +  AP A+LPH LRWYN I SY
Sbjct: 11  VFEALKSAPPASLPHALRWYNHIVSY 36


>SB_25408| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 1636

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +1

Query: 91  PPSALNDLNQYLAEKSYVSGYTPSQADVQRI 183
           P   +N L + L EKS+  GY+P+ +DVQ +
Sbjct: 58  PQFQVNKLPKGLIEKSWNFGYSPNTSDVQTV 88


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,299,655
Number of Sequences: 59808
Number of extensions: 244354
Number of successful extensions: 623
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)