Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_L08
         (620 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.02c |cox10||protoheme IX farnesyltransferase|Schizosacch...    72   8e-14
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...    29   0.72 
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...    29   0.72 
SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    28   1.3  
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    25   6.7  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    25   6.7  

>SPBC365.02c |cox10||protoheme IX
           farnesyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 387

 Score = 71.7 bits (168), Expect = 8e-14
 Identities = 39/84 (46%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
 Frame = +3

Query: 372 LMLSKSRLTSLVVLTSMAGYALAPAP-FQLTTFAFCAVGTGLVSAAANSINQYHEVPFDA 548
           L L K RLT LVVL++M+ YALAP P     T A+  +GT L S +AN+ NQ  E   D 
Sbjct: 88  LELGKPRLTVLVVLSTMSSYALAPYPGLSFNTLAWLTMGTALCSISANAFNQSMEPMLDC 147

Query: 549 QMSRTKNRVLVKGLLXPVHAIGFA 620
           QM+RT++R + +G + P +A  FA
Sbjct: 148 QMARTRSRPIPRGAIRPEYAWLFA 171


>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 28.7 bits (61), Expect = 0.72
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = -2

Query: 409 TTNDVNRDLDSIKQYCPVLLFLSY 338
           +T  +NR+L+ IK+YC V+  L++
Sbjct: 140 STQSINRELERIKKYCSVVRVLAH 163


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 28.7 bits (61), Expect = 0.72
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = -2

Query: 409 TTNDVNRDLDSIKQYCPVLLFLSY 338
           +T  +NR+L+ IK+YC V+  L++
Sbjct: 140 STQSINRELERIKKYCSVVRVLAH 163


>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 541

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 329 FLPYSGVLGDFILYRCSCLSF 267
           F P SG+ G F++Y C+ L F
Sbjct: 155 FAPLSGIYGRFVVYFCTLLMF 175


>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = -2

Query: 406 TNDVNRDLDSIKQYCPVLLFLSYD---GVSFHTLVS 308
           T D   DLD+ + Y P+ +  +Y    G+SF ++ S
Sbjct: 390 TKDATFDLDAYQNYSPIFMSTTYALAFGLSFASITS 425


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +3

Query: 216 HLARISTAQNWRSKVPLKTQTTATVKNKVTQDTRVWKETPSYDRKSNT 359
           H+  IS   + +   P  T T+  + NKV+  T+ +  T SY   +NT
Sbjct: 729 HINVISPGPSLQVNAPY-TPTSGELGNKVSNPTKEFVSTSSYAPAANT 775


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,600,557
Number of Sequences: 5004
Number of extensions: 53588
Number of successful extensions: 115
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)