Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_L08
         (620 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0176 - 18957676-18958067,18958139-18958242,18958358-189584...    54   1e-07
08_02_0193 - 14073103-14073246,14073332-14073481,14073571-140736...    33   0.24 
03_05_0717 + 27097367-27097621,27097744-27097866,27098136-270983...    28   5.2  
02_01_0486 - 3495792-3496034,3496862-3496934,3497128-3497422,349...    28   5.2  
08_02_0908 - 22499254-22499917,22500058-22500335,22501804-225018...    28   6.9  
06_01_1019 - 7971606-7972077,7972550-7972752                           28   6.9  
04_04_1031 - 30254665-30255794,30256181-30257036                       27   9.1  
01_06_0191 - 27334412-27335155                                         27   9.1  

>01_05_0176 -
           18957676-18958067,18958139-18958242,18958358-18958483,
           18959495-18959628,18959757-18959894,18960835-18960964,
           18961316-18961357,18964741-18965024
          Length = 449

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
 Frame = +3

Query: 399 SLVVLTSMAGYALAPAPF-QLTTFAFCAVGTGLVSAAANSINQYHEVPFDAQMSRTKNRV 575
           +LVV TS AGY L       +        GT +V+A+AN++NQ  E+  DA+M RT  R 
Sbjct: 110 ALVVATSGAGYVLGSGNMVDIAGLCCTCAGTMMVAASANTLNQVFEIKNDAKMKRTMRRP 169

Query: 576 LVKGLLXPVHAIGFA 620
           L  G + P HA  +A
Sbjct: 170 LPSGRISPAHAAMWA 184


>08_02_0193 -
           14073103-14073246,14073332-14073481,14073571-14073640,
           14073900-14074021,14074260-14074395,14074492-14074967
          Length = 365

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +3

Query: 468 AFCAVGTGLVSAAANSINQYHEVPFDAQMSRTKNRVLVKGLLXPVHAIGF 617
           A    G  L+  A  ++N   +   D ++ RTK+R    G+L P   +GF
Sbjct: 177 ALFGCGAVLLRGAGCTVNDLLDRDIDNKVERTKSRPFASGILTPTQGVGF 226


>03_05_0717 +
           27097367-27097621,27097744-27097866,27098136-27098303,
           27098393-27100072
          Length = 741

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 7/78 (8%)
 Frame = -1

Query: 326 LPYSGVLGDFILYRCSCLSFKWHFTSPVLCC*YSGKMLEECVISNFK*NWFRVNSHVSMF 147
           +P S   GD  LYR      KW     +L      K L + VI NF+ +++ + + +S +
Sbjct: 186 MPESSKNGDIRLYRALDFPLKWELEKVLL-----EKPLVDSVIINFQGSYWLLGTDLSSY 240

Query: 146 QAAR-------YSVSPLN 114
            A R       YS SPL+
Sbjct: 241 GAKRNREISIWYSNSPLS 258


>02_01_0486 -
           3495792-3496034,3496862-3496934,3497128-3497422,
           3497585-3497759,3498349-3498795,3499994-3500053
          Length = 430

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
 Frame = +3

Query: 288 VKNKVTQDTRVWKETPSYDRKSNTGQYCL---MLSKSRLTSLVVLTSMAGYALA 440
           V+ +     R WKETP     S    +C    +L K      ++L S  G+ +A
Sbjct: 317 VQQRAAHPHRFWKETPVLVMVSTLAYFCFLEQLLLKMGAVLAILLASFTGFGIA 370


>08_02_0908 -
           22499254-22499917,22500058-22500335,22501804-22501851,
           22503474-22503575
          Length = 363

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 396 TSLVVLTSMAGYALAPAPFQLTTFAFCAVGTGLVSAAANS 515
           +S V   + AG + +PAP Q+  F   + G G V  + NS
Sbjct: 97  SSTVTAAAFAGGSSSPAPLQVLVFQQQSTGNGNVEISFNS 136


>06_01_1019 - 7971606-7972077,7972550-7972752
          Length = 224

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +3

Query: 171 SKPVLFKITNNTLFQHLARISTAQNWRSKVPLKTQTTATVKNKVTQDTRVWKETP--SYD 344
           ++ V  ++ +N   + + R++T    R  + L  Q    V  + T+DT +W+ +P  +Y 
Sbjct: 90  NRTVAQELQDNRWLRQMRRMNTTAQVREFIHLWHQIQQVVLQEGTEDTIMWRWSPNGTYS 149

Query: 345 RKS 353
            KS
Sbjct: 150 AKS 152


>04_04_1031 - 30254665-30255794,30256181-30257036
          Length = 661

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +3

Query: 192 ITNNTLFQHLARISTAQNWRSKVPLKTQTTATV 290
           ITN  LF HL   S   +W  ++ +  +T + +
Sbjct: 429 ITNGALFSHLQNTSVLISWEDRLRIAVETASAL 461


>01_06_0191 - 27334412-27335155
          Length = 247

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = +3

Query: 387 SRLTSLVVLTSMAGYALAPAPFQLTTFAFCAVGTGLVSAAANSINQY 527
           +R  ++VVL +MA  A A AP    T A  A G   V+A      QY
Sbjct: 2   ARSVAVVVLLAMAAVAAAQAPGPAATPAAGATGPPNVTAVLEKGGQY 48


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,482,215
Number of Sequences: 37544
Number of extensions: 332969
Number of successful extensions: 644
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)