Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_L08
         (620 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23494| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_7580| Best HMM Match : Topoisom_bac (HMM E-Value=0)                 28   5.3  
SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_1224| Best HMM Match : bZIP_1 (HMM E-Value=8e-10)                   28   7.0  

>SB_23494| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1013

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 428  IRTSTCPVSTYYLCILRCGYWSSISCSKLYKSVS 529
            IRT+  P+    L   RCG   S+SCS+  +S++
Sbjct: 954  IRTTANPLPRLILLYCRCGINDSVSCSRTCQSLA 987


>SB_7580| Best HMM Match : Topoisom_bac (HMM E-Value=0)
          Length = 856

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
 Frame = +3

Query: 141 CLKHGYVGVY-SKPVLFKITNNTLFQHLARIS---TAQNWRSKVPLKTQTTATVKNKVTQ 308
           C  H Y G + ++PV FK+T+  +  H+  +       NW +  PL+  T  T+K + T+
Sbjct: 36  CSVHEYSGSFRNEPVKFKMTS--VCGHVMSLDFHHKYNNWDAVDPLELFTATTLKKEATE 93

Query: 309 DTRVWK 326
             ++ K
Sbjct: 94  KLQMPK 99


>SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1066

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
 Frame = +3

Query: 270 TQTTATVKNKVTQDTRV-----WKETPSYD-RKSNTGQYCLMLSKSRLTSLVVLTSMAGY 431
           T T+  V NK +   +V     ++  PS+   K+NTGQ  L+  ++ L +     S+   
Sbjct: 287 TSTSENVLNKTSNSKKVESAENFERLPSFQANKNNTGQDSLINIQTSLNASQRAQSLNAA 346

Query: 432 ALAPAPF 452
           +  PAPF
Sbjct: 347 SEGPAPF 353


>SB_1224| Best HMM Match : bZIP_1 (HMM E-Value=8e-10)
          Length = 496

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 16/58 (27%), Positives = 30/58 (51%)
 Frame = +3

Query: 345 RKSNTGQYCLMLSKSRLTSLVVLTSMAGYALAPAPFQLTTFAFCAVGTGLVSAAANSI 518
           R S T Q C+ + +  L  + + +++   A+ PAP Q+     CA  T + S++A  +
Sbjct: 119 RGSYTDQLCITVKRYNLLCICIESNVT-LAMIPAPKQIAKTHACATST-ITSSSAEHV 174


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,447,808
Number of Sequences: 59808
Number of extensions: 404541
Number of successful extensions: 767
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)