Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_L08
(620 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110485-34|CAB60348.3| 397|Caenorhabditis elegans Hypothetical... 73 2e-13
AL110484-29|CAE48674.1| 397|Caenorhabditis elegans Hypothetical... 73 2e-13
U70853-1|AAB09143.2| 439|Caenorhabditis elegans Hypothetical pr... 30 1.2
U97008-11|AAK72054.1| 224|Caenorhabditis elegans Hypothetical p... 29 2.0
U13876-11|AAN63395.1| 201|Caenorhabditis elegans Coenzyme q (ub... 29 2.0
U13876-10|AAN63394.1| 216|Caenorhabditis elegans Coenzyme q (ub... 29 2.0
U13876-9|AAW88395.1| 356|Caenorhabditis elegans Coenzyme q (ubi... 29 2.0
U13876-8|AAN63396.1| 370|Caenorhabditis elegans Coenzyme q (ubi... 29 2.0
U13876-7|AAW88396.1| 427|Caenorhabditis elegans Coenzyme q (ubi... 29 2.0
>AL110485-34|CAB60348.3| 397|Caenorhabditis elegans Hypothetical
protein Y46G5A.2 protein.
Length = 397
Score = 72.9 bits (171), Expect = 2e-13
Identities = 38/83 (45%), Positives = 49/83 (59%)
Frame = +3
Query: 372 LMLSKSRLTSLVVLTSMAGYALAPAPFQLTTFAFCAVGTGLVSAAANSINQYHEVPFDAQ 551
L L KS+L+ V T+ G +AP P + VGT L+S+AAN+ NQ E P+DAQ
Sbjct: 93 LALCKSKLSLFVASTATCGVLMAPVPVAADSLIAATVGTFLLSSAANACNQLLEAPYDAQ 152
Query: 552 MSRTKNRVLVKGLLXPVHAIGFA 620
M RT+ RVLV P+HA FA
Sbjct: 153 MRRTQTRVLVVHRFSPLHAFTFA 175
>AL110484-29|CAE48674.1| 397|Caenorhabditis elegans Hypothetical
protein Y46G5A.2 protein.
Length = 397
Score = 72.9 bits (171), Expect = 2e-13
Identities = 38/83 (45%), Positives = 49/83 (59%)
Frame = +3
Query: 372 LMLSKSRLTSLVVLTSMAGYALAPAPFQLTTFAFCAVGTGLVSAAANSINQYHEVPFDAQ 551
L L KS+L+ V T+ G +AP P + VGT L+S+AAN+ NQ E P+DAQ
Sbjct: 93 LALCKSKLSLFVASTATCGVLMAPVPVAADSLIAATVGTFLLSSAANACNQLLEAPYDAQ 152
Query: 552 MSRTKNRVLVKGLLXPVHAIGFA 620
M RT+ RVLV P+HA FA
Sbjct: 153 MRRTQTRVLVVHRFSPLHAFTFA 175
>U70853-1|AAB09143.2| 439|Caenorhabditis elegans Hypothetical
protein M01H9.2 protein.
Length = 439
Score = 30.3 bits (65), Expect = 1.2
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Frame = +2
Query: 392 VNIISCVDVYGRIRTSTCPVSTYYLCILRCGYWSS---ISCSKL--YKSVS*STI*CPNV 556
+N++ C D I C T C+ R GY+ ++C Y+ + I C V
Sbjct: 278 INLLGCKDKDEVI----CKHVTADTCLSRPGYYLKLCPVTCKNCSGYQCIDSIKIDCAEV 333
Query: 557 EDKEQGACQRSIXARPCNRFC 619
K QGAC+ S+ + C R C
Sbjct: 334 --KAQGACKLSVASEYCPRTC 352
>U97008-11|AAK72054.1| 224|Caenorhabditis elegans Hypothetical
protein C03G6.5 protein.
Length = 224
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Frame = -2
Query: 436 SAYPAIDVNTTNDVNRD--LDSIKQYCPVLLFLSYDGVS 326
S Y ++ T +D +D ++SIKQYC ++++S DG S
Sbjct: 107 SCYSNLNCTTKSDDEKDKYVESIKQYCDAVVYVS-DGFS 144
>U13876-11|AAN63395.1| 201|Caenorhabditis elegans Coenzyme q
(ubiquinone) biosynthesisprotein 2, isoform d protein.
Length = 201
Score = 29.5 bits (63), Expect = 2.0
Identities = 20/58 (34%), Positives = 28/58 (48%)
Frame = +3
Query: 441 PAPFQLTTFAFCAVGTGLVSAAANSINQYHEVPFDAQMSRTKNRVLVKGLLXPVHAIG 614
P+ + L+ F G L+ +A IN + FD ++ RTK R L G L AIG
Sbjct: 98 PSIYMLSLFG---AGAFLMRSAGCVINDLWDKDFDKKVERTKLRPLACGSLTEKQAIG 152
>U13876-10|AAN63394.1| 216|Caenorhabditis elegans Coenzyme q
(ubiquinone) biosynthesisprotein 2, isoform c protein.
Length = 216
Score = 29.5 bits (63), Expect = 2.0
Identities = 20/58 (34%), Positives = 28/58 (48%)
Frame = +3
Query: 441 PAPFQLTTFAFCAVGTGLVSAAANSINQYHEVPFDAQMSRTKNRVLVKGLLXPVHAIG 614
P+ + L+ F G L+ +A IN + FD ++ RTK R L G L AIG
Sbjct: 98 PSIYMLSLFG---AGAFLMRSAGCVINDLWDKDFDKKVERTKLRPLACGSLTEKQAIG 152
>U13876-9|AAW88395.1| 356|Caenorhabditis elegans Coenzyme q
(ubiquinone) biosynthesisprotein 2, isoform a protein.
Length = 356
Score = 29.5 bits (63), Expect = 2.0
Identities = 20/58 (34%), Positives = 28/58 (48%)
Frame = +3
Query: 441 PAPFQLTTFAFCAVGTGLVSAAANSINQYHEVPFDAQMSRTKNRVLVKGLLXPVHAIG 614
P+ + L+ F G L+ +A IN + FD ++ RTK R L G L AIG
Sbjct: 98 PSIYMLSLFG---AGAFLMRSAGCVINDLWDKDFDKKVERTKLRPLACGSLTEKQAIG 152
>U13876-8|AAN63396.1| 370|Caenorhabditis elegans Coenzyme q
(ubiquinone) biosynthesisprotein 2, isoform e protein.
Length = 370
Score = 29.5 bits (63), Expect = 2.0
Identities = 20/58 (34%), Positives = 28/58 (48%)
Frame = +3
Query: 441 PAPFQLTTFAFCAVGTGLVSAAANSINQYHEVPFDAQMSRTKNRVLVKGLLXPVHAIG 614
P+ + L+ F G L+ +A IN + FD ++ RTK R L G L AIG
Sbjct: 98 PSIYMLSLFG---AGAFLMRSAGCVINDLWDKDFDKKVERTKLRPLACGSLTEKQAIG 152
>U13876-7|AAW88396.1| 427|Caenorhabditis elegans Coenzyme q
(ubiquinone) biosynthesisprotein 2, isoform b protein.
Length = 427
Score = 29.5 bits (63), Expect = 2.0
Identities = 20/58 (34%), Positives = 28/58 (48%)
Frame = +3
Query: 441 PAPFQLTTFAFCAVGTGLVSAAANSINQYHEVPFDAQMSRTKNRVLVKGLLXPVHAIG 614
P+ + L+ F G L+ +A IN + FD ++ RTK R L G L AIG
Sbjct: 98 PSIYMLSLFG---AGAFLMRSAGCVINDLWDKDFDKKVERTKLRPLACGSLTEKQAIG 152
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,340,216
Number of Sequences: 27780
Number of extensions: 300471
Number of successful extensions: 702
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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