Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_L07
         (581 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    25   0.35 
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    21   7.6  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        21   7.6  

>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 25.4 bits (53), Expect = 0.35
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 217 PILGAKDDVAPTSPPT 170
           PIL  K  V+PT+PPT
Sbjct: 85  PILAEKVSVSPTTPPT 100


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 342 EQQLSGLVCFELSAA 298
           E+ + GLVCF L A+
Sbjct: 400 EEVVLGLVCFRLKAS 414


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 407 KYQTQRQHLP*XCSRHCEDHEKQ 475
           K + Q+ H P    RH E+ +KQ
Sbjct: 352 KRKRQKYHDPSQLLRHVEESDKQ 374


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,419
Number of Sequences: 336
Number of extensions: 3018
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14517299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)