Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_L07
         (581 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1026 + 30214437-30214937                                        228   3e-60
02_05_0416 + 28791512-28792012                                        224   3e-59
06_01_0796 - 5932794-5934212,5934955-5935013,5936324-5936414           29   2.0  
03_06_0776 - 36176390-36177589                                         29   2.0  
11_01_0669 - 5454116-5454153,5454569-5454770,5454865-5455029,545...    28   6.2  
07_03_0313 + 16620817-16621515                                         27   8.2  
04_04_1551 - 34348110-34348225,34348468-34348606,34348658-343488...    27   8.2  
04_01_0314 - 4243928-4244361,4245178-4245415                           27   8.2  

>04_04_1026 + 30214437-30214937
          Length = 166

 Score =  228 bits (557), Expect = 3e-60
 Identities = 108/152 (71%), Positives = 131/152 (86%), Gaps = 1/152 (0%)
 Frame = +3

Query: 120 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKIT 296
           MPPK DP ++  V +R  GGEVGA SSLAPKIGPLGLSPKK+G+DIAK T+ DWKGL++T
Sbjct: 1   MPPKLDPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60

Query: 297 VQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEXVVGIAKIMRNR 476
           V+LTVQNRQA+++VVPSAAAL+I+ALKEP RDRKK KNIKH+GNISL+ V+ IA+IMRNR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHSGNISLDDVIEIARIMRNR 120

Query: 477 SMARYLSGSXKEILGTAQSVGCTVEGXPPHDL 572
           SMA+ ++G+ KEILGT  SVGCTV+G  P DL
Sbjct: 121 SMAKEMAGTVKEILGTCVSVGCTVDGKDPKDL 152


>02_05_0416 + 28791512-28792012
          Length = 166

 Score =  224 bits (548), Expect = 3e-59
 Identities = 106/152 (69%), Positives = 130/152 (85%), Gaps = 1/152 (0%)
 Frame = +3

Query: 120 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKIT 296
           MPPK DP ++  V +R  GGEVGA SSLAPKIGPLGLSPKK+G+DIAK T+ DWKGL++T
Sbjct: 1   MPPKLDPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60

Query: 297 VQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEXVVGIAKIMRNR 476
           V+LTVQNRQA+++VVPSAAAL+I+ALKEP RDRKK KNIKH+GNISL+ V+ IA++MR R
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHSGNISLDDVIEIARVMRPR 120

Query: 477 SMARYLSGSXKEILGTAQSVGCTVEGXPPHDL 572
           SMA+ ++G+ KEILGT  SVGCTV+G  P DL
Sbjct: 121 SMAKEMAGTVKEILGTCVSVGCTVDGKDPKDL 152


>06_01_0796 - 5932794-5934212,5934955-5935013,5936324-5936414
          Length = 522

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +3

Query: 276 WKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQ 404
           W    + V   V +    + V+P+A A +IRA+ + P  R++Q
Sbjct: 33  WYSYLVDVDADVDDDMISLRVLPNARAALIRAVADAPGRREEQ 75


>03_06_0776 - 36176390-36177589
          Length = 399

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +3

Query: 402 QKNIKHNGNISLEXVVGIAKIMRNRSMARY 491
           +K+I++ G++ LE    + K+M +RSM RY
Sbjct: 113 EKSIQNIGSLELERNAAVEKLMSSRSMHRY 142


>11_01_0669 -
           5454116-5454153,5454569-5454770,5454865-5455029,
           5455278-5456183
          Length = 436

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 117 KMPPK-FDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKV 245
           K+P + F  N +KIV ++C G EV         +G  G+  +K+
Sbjct: 369 KIPEEPFVSNHLKIVEIKCKGKEVMWVCKFLKTLGTFGIPLEKI 412


>07_03_0313 + 16620817-16621515
          Length = 232

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -2

Query: 283 PFQSLVALAMSSPTFLGDRPRGPILGAKDDVAPTSPPTHRKFTILI 146
           PF     +A++      D     +LGAK D+   S P H K  +L+
Sbjct: 15  PFGQRCRIALAEKKLPYDYSEQELLGAKSDLLLRSNPIHAKVPVLL 60


>04_04_1551 -
           34348110-34348225,34348468-34348606,34348658-34348896,
           34349042-34349140,34349207-34350188,34350737-34350832,
           34350936-34351064,34351253-34351332,34351420-34351661,
           34351743-34352692
          Length = 1023

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = +3

Query: 159 NLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIA 260
           N +C G E G  S  AP++ PLG+ PK  G+ IA
Sbjct: 736 NSKCAGAE-GINS--APRVTPLGIRPKG-GESIA 765


>04_01_0314 - 4243928-4244361,4245178-4245415
          Length = 223

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +3

Query: 330 IAVVPSAAALIIR--ALKEPPRDRKKQKNIKHNGNISLEXVVGIAKIMRNRS 479
           + +V S    IIR   + E    +K    ++HN   S   VVG+   ++NRS
Sbjct: 85  VLLVSSILLAIIRLICISEINNPQKSVSKLRHNTTTSRTIVVGLTTSLKNRS 136


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,193,524
Number of Sequences: 37544
Number of extensions: 355440
Number of successful extensions: 870
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)