Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_L05
(581 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0319 - 16712572-16712654,16712756-16712797,16713955-167142... 165 2e-41
03_01_0276 + 2124538-2124550,2124678-2124962,2126813-2126854,212... 165 2e-41
02_05_1201 + 34929577-34929589,34930252-34930587,34931378-349314... 165 2e-41
12_02_1115 - 26173351-26173725,26174241-26174344,26174812-26174845 57 1e-08
08_01_0935 - 9218271-9219860,9219959-9220232,9220506-9221767 30 1.2
03_05_0291 - 22837412-22838128 29 2.0
06_01_0902 - 6934236-6935546 29 2.7
03_06_0296 + 32901696-32901892,32901989-32902232,32903992-329041... 29 3.6
02_02_0500 - 10993675-10994067,10994434-10995738 29 3.6
06_03_0458 - 20995834-20996004,20996404-20997309,20997778-209979... 28 4.7
06_03_0025 - 15577231-15577420,15577682-15577813,15578025-155781... 28 6.2
11_06_0538 + 24759030-24759379,24759380-24759488,24759604-247596... 27 8.2
04_04_1074 + 30628192-30628456,30628924-30629144 27 8.2
>10_08_0319 -
16712572-16712654,16712756-16712797,16713955-16714239,
16714346-16714358
Length = 140
Score = 165 bits (401), Expect = 2e-41
Identities = 73/89 (82%), Positives = 84/89 (94%)
Frame = +3
Query: 156 KAIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNA 335
K IKGRLNRLP+A GDM++ATVKKGKP+LRKKVMPAV++RQRKP+RR+DGV++YFEDNA
Sbjct: 43 KGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVYMYFEDNA 102
Query: 336 GVIVNNKGEMKGSAITGPVAKECADLWPR 422
GVIVN KGEMKGSAITGP+ KECADLWPR
Sbjct: 103 GVIVNPKGEMKGSAITGPIGKECADLWPR 131
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/25 (76%), Positives = 22/25 (88%)
Frame = +1
Query: 28 MSKRGRGGSAGAKFRISLGLPAGSS 102
MSKRGRGGSAG KFR+SLGLP ++
Sbjct: 1 MSKRGRGGSAGNKFRMSLGLPVAAT 25
Score = 42.3 bits (95), Expect = 3e-04
Identities = 16/23 (69%), Positives = 21/23 (91%)
Frame = +2
Query: 92 LGAVINCADNTGAKNLYVIAVQG 160
+ A +NCADNTGAKNLY+I+V+G
Sbjct: 22 VAATVNCADNTGAKNLYIISVKG 44
>03_01_0276 +
2124538-2124550,2124678-2124962,2126813-2126854,
2126943-2127025
Length = 140
Score = 165 bits (401), Expect = 2e-41
Identities = 73/89 (82%), Positives = 84/89 (94%)
Frame = +3
Query: 156 KAIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNA 335
K IKGRLNRLP+A GDM++ATVKKGKP+LRKKVMPAV++RQRKP+RR+DGV++YFEDNA
Sbjct: 43 KGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVYMYFEDNA 102
Query: 336 GVIVNNKGEMKGSAITGPVAKECADLWPR 422
GVIVN KGEMKGSAITGP+ KECADLWPR
Sbjct: 103 GVIVNPKGEMKGSAITGPIGKECADLWPR 131
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/25 (76%), Positives = 22/25 (88%)
Frame = +1
Query: 28 MSKRGRGGSAGAKFRISLGLPAGSS 102
MSKRGRGGSAG KFR+SLGLP ++
Sbjct: 1 MSKRGRGGSAGNKFRMSLGLPVAAT 25
Score = 42.3 bits (95), Expect = 3e-04
Identities = 16/23 (69%), Positives = 21/23 (91%)
Frame = +2
Query: 92 LGAVINCADNTGAKNLYVIAVQG 160
+ A +NCADNTGAKNLY+I+V+G
Sbjct: 22 VAATVNCADNTGAKNLYIISVKG 44
>02_05_1201 +
34929577-34929589,34930252-34930587,34931378-34931419,
34931630-34931712
Length = 157
Score = 165 bits (401), Expect = 2e-41
Identities = 73/89 (82%), Positives = 84/89 (94%)
Frame = +3
Query: 156 KAIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNA 335
K IKGRLNRLP+A GDM++ATVKKGKP+LRKKVMPAV++RQRKP+RR+DGV++YFEDNA
Sbjct: 60 KGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVYMYFEDNA 119
Query: 336 GVIVNNKGEMKGSAITGPVAKECADLWPR 422
GVIVN KGEMKGSAITGP+ KECADLWPR
Sbjct: 120 GVIVNPKGEMKGSAITGPIGKECADLWPR 148
Score = 42.3 bits (95), Expect = 3e-04
Identities = 16/23 (69%), Positives = 21/23 (91%)
Frame = +2
Query: 92 LGAVINCADNTGAKNLYVIAVQG 160
+ A +NCADNTGAKNLY+I+V+G
Sbjct: 39 VAATVNCADNTGAKNLYIISVKG 61
Score = 35.9 bits (79), Expect = 0.024
Identities = 15/21 (71%), Positives = 18/21 (85%)
Frame = +1
Query: 40 GRGGSAGAKFRISLGLPAGSS 102
GRGGSAG KFR+SLGLP ++
Sbjct: 22 GRGGSAGNKFRMSLGLPVAAT 42
>12_02_1115 - 26173351-26173725,26174241-26174344,26174812-26174845
Length = 170
Score = 56.8 bits (131), Expect = 1e-08
Identities = 31/70 (44%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Frame = +3
Query: 201 GDMIVATVKKGKPELRKK---VMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKG 371
GD I+ +VK+ +P + K V+ VV+R R DG I F+DNA V+VNNKGE+ G
Sbjct: 84 GDTIIGSVKEAQPRGKVKKGDVVYGVVVRAAMKRGRNDGSEIQFDDNAIVLVNNKGELIG 143
Query: 372 SAITGPVAKE 401
+ + GPV E
Sbjct: 144 TRVFGPVPHE 153
>08_01_0935 - 9218271-9219860,9219959-9220232,9220506-9221767
Length = 1041
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +3
Query: 54 RGSEIPYLPGSPSWEQ*STAPTTQ 125
RG+ +P L +PSWE+ S APT +
Sbjct: 569 RGAAVPTLKMNPSWEKPSVAPTLE 592
>03_05_0291 - 22837412-22838128
Length = 238
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = -2
Query: 436 AFEAIRGHRSAHSLATGPVMAEPFI--SPLLLTMTPALSS 323
+++A+ GH+++H T P MA + P T +PA SS
Sbjct: 100 SYQALGGHKTSHRPRTPPTMAAVVVVDEPAATTASPAASS 139
>06_01_0902 - 6934236-6935546
Length = 436
Score = 29.1 bits (62), Expect = 2.7
Identities = 22/68 (32%), Positives = 29/68 (42%)
Frame = +1
Query: 46 GGSAGAKFRISLGLPAGSSNQLRRQHRGKESVCDRCPRLSKVA*TDCRRPVPGT*LWPQS 225
GG GA ++ AGSS R+ RG+ V D P + VA P+P L PQ
Sbjct: 11 GGGGGAMVEVAFASSAGSSAAAPRRLRGELVVRDAIP-YAGVAPPPPALPLPQPQLQPQV 69
Query: 226 KRVNLNSG 249
+ G
Sbjct: 70 QATTSGGG 77
>03_06_0296 +
32901696-32901892,32901989-32902232,32903992-32904112,
32904219-32904406
Length = 249
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -1
Query: 341 DTRIVLKVYKYSITPSERFPLPDDHCRHYLFPEFRFTLFDCGHNHV 204
+ I+++ Y+ T +R P P D + +F F L+DC +N V
Sbjct: 101 EINIIIEAYR---TLRDRGPYPADQVVRDINGKFAFVLYDCSNNSV 143
>02_02_0500 - 10993675-10994067,10994434-10995738
Length = 565
Score = 28.7 bits (61), Expect = 3.6
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Frame = -2
Query: 385 PVMAEPFISPLLLTMTPALSSKYINTPSRLLNGFRCLMTT---AGITFFR-SSGLPFLTV 218
P EP I+ + ++PA+ +T S + NG+ +M+T G+ F + SSG + V
Sbjct: 225 PAPVEPIIANGKVKLSPAVMEMIYSTISGIENGYLPVMSTEGSGGVYFMKDSSGESNVAV 284
Query: 217 ATIMSPEPAA 188
+ EP A
Sbjct: 285 FKPIDEEPMA 294
>06_03_0458 -
20995834-20996004,20996404-20997309,20997778-20997942,
20998024-20998353,20998471-20998527,20998579-20998692,
20999220-20999381,20999465-20999527,21001100-21001207,
21001598-21001675,21001771-21001902
Length = 761
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Frame = +3
Query: 324 EDNAGVIV--NNKGEMKGSAITGPVAKECAD 410
ED +I+ N+KG +GS ITG + + CA+
Sbjct: 715 EDGDKIIMSSNDKGSNQGSFITGKIVESCAE 745
>06_03_0025 -
15577231-15577420,15577682-15577813,15578025-15578173,
15579012-15579071,15593208-15593297,15593604-15593871,
15594517-15594608,15595355-15595441,15597333-15597440,
15597709-15597822,15598253-15598420,15599442-15599579,
15599699-15599908,15600986-15601237,15601965-15602111,
15603327-15603443
Length = 773
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -1
Query: 296 SERFPLPDDHCRHYLFPEFRFTLFDCGHNHVPGTGRRQS 180
S R PLP+D C Y+ ++R + H+ G R S
Sbjct: 25 SSRVPLPEDTCDSYVEQKYRCYIRTLKGCHISGRNRLDS 63
>11_06_0538 +
24759030-24759379,24759380-24759488,24759604-24759692,
24760179-24760287,24760370-24760471,24760564-24760628,
24760830-24760936,24761023-24761087,24761163-24761217,
24761305-24761465
Length = 403
Score = 27.5 bits (58), Expect = 8.2
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = -2
Query: 352 LLTMTPALSSKY-INTPSRLLNGFRCLMTT--AGITFFRSSGLPFLTVATIMSPEPAAGS 182
LLT P + + SRL R L AG+ FF S+ + + I+ P P++
Sbjct: 37 LLTQRPCVEGTMTMGEQSRLPESLRLLDAAFDAGVNFFDSAEMYYYAPLLILPPPPSSFP 96
Query: 181 LFR 173
LF+
Sbjct: 97 LFQ 99
>04_04_1074 + 30628192-30628456,30628924-30629144
Length = 161
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 61 AKFRISLGLPAGSSNQLRRQHRGKESVCDRCP 156
A F S PA + +LRRQH + VCD P
Sbjct: 2 AFFAGSSKAPASARLKLRRQHDQQREVCDALP 33
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,789,844
Number of Sequences: 37544
Number of extensions: 352774
Number of successful extensions: 1060
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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