Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_L05
(581 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_294| Best HMM Match : Ribosomal_L14 (HMM E-Value=4.1e-23) 108 3e-24
SB_52932| Best HMM Match : Ank (HMM E-Value=0) 29 2.1
SB_10243| Best HMM Match : Ank (HMM E-Value=0) 29 2.1
SB_43190| Best HMM Match : GKAP (HMM E-Value=1.6e-09) 29 3.7
SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_38403| Best HMM Match : PP2C (HMM E-Value=8.5e-35) 28 4.8
SB_39762| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_55359| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_20073| Best HMM Match : F5_F8_type_C (HMM E-Value=2.9e-18) 27 8.5
>SB_294| Best HMM Match : Ribosomal_L14 (HMM E-Value=4.1e-23)
Length = 145
Score = 108 bits (260), Expect = 3e-24
Identities = 54/82 (65%), Positives = 66/82 (80%)
Frame = +3
Query: 111 APTTQGQRICM*SLSKAIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKP 290
A T G+ + + ++ K IKGRLNRLPAA SGDM++ATVKKGKPELRKKVMPAVVIRQRK
Sbjct: 48 ADNTGGKNLYIIAV-KGIKGRLNRLPAAASGDMVLATVKKGKPELRKKVMPAVVIRQRKA 106
Query: 291 FRRRDGVFIYFEDNAGVIVNNK 356
+RR++GVF+YFE N V V +
Sbjct: 107 YRRKNGVFLYFEANIKVRVRKQ 128
Score = 46.4 bits (105), Expect = 2e-05
Identities = 19/23 (82%), Positives = 22/23 (95%)
Frame = +2
Query: 92 LGAVINCADNTGAKNLYVIAVQG 160
+GAVINCADNTG KNLY+IAV+G
Sbjct: 41 VGAVINCADNTGGKNLYIIAVKG 63
Score = 38.3 bits (85), Expect = 0.005
Identities = 15/21 (71%), Positives = 19/21 (90%)
Frame = +1
Query: 37 RGRGGSAGAKFRISLGLPAGS 99
RGRGG++G KFRI+LGLP G+
Sbjct: 23 RGRGGTSGGKFRIALGLPVGA 43
>SB_52932| Best HMM Match : Ank (HMM E-Value=0)
Length = 1266
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 89 QLGAVINCADNTGAKNLYVIAVQG 160
+LGA ++CADN G L +A QG
Sbjct: 914 KLGATVDCADNEGRTPLQAVAWQG 937
>SB_10243| Best HMM Match : Ank (HMM E-Value=0)
Length = 475
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 89 QLGAVINCADNTGAKNLYVIAVQG 160
+LGA ++CADN G L +A QG
Sbjct: 110 KLGATVDCADNEGRTPLQAVAWQG 133
>SB_43190| Best HMM Match : GKAP (HMM E-Value=1.6e-09)
Length = 816
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -2
Query: 199 EPAAGSLFRRPLIALDSDHIQILCPCVVGAVDYCSQLGD 83
EP GSL+ R L+ ++D + LC C ++ +L D
Sbjct: 360 EPEKGSLYFRMLVTSETDKLNKLCACWDKVLEEEEELSD 398
>SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4865
Score = 28.7 bits (61), Expect = 3.7
Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -1
Query: 371 ALHFALVIDYDTRIVLKVYKYSITPSERFPLPDDHCRHYL-FPEF 240
A FA+ Y R L Y+Y TPS+ F D CR L FP F
Sbjct: 3671 ASRFAMSQAY-VRYFLYTYRYCATPSDLFNFIRDKCRASLRFPLF 3714
>SB_38403| Best HMM Match : PP2C (HMM E-Value=8.5e-35)
Length = 916
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +2
Query: 116 DNTGAKNLYVIAVQGYQRSPEQTAGGRFRGHDCGHSQKG*T*TPEKGNA 262
+N K++YVIA+Q + E + + GH G + T EK NA
Sbjct: 130 NNLELKDVYVIALQRANENEEDSGEDSEEEEENGHLMNGDSKTEEKKNA 178
>SB_39762| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 27.9 bits (59), Expect = 6.4
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -1
Query: 362 FALVIDYDTRIVLKVYKYSITPSERFPLPDDHCRHYL-FPEF 240
FA+ Y R L Y+Y TPS+ F D CR L FP F
Sbjct: 2 FAMSQAY-VRYFLYTYRYCATPSDLFNFIRDKCRASLRFPLF 42
>SB_55359| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2516
Score = 27.9 bits (59), Expect = 6.4
Identities = 20/59 (33%), Positives = 25/59 (42%)
Frame = -3
Query: 216 PQSCPRNRPPAVCSGDL**PWTAITYRFFAPVLSAQLITAPSWETQGDTEFRSRGTTTS 40
P C R RPP VC W + Y +F+ +A L T W D +SRG S
Sbjct: 1428 PYMCKRTRPPGVCDAGW-VYWGGLCY-YFSNATTADLKT---WMEARDFCRKSRGDLVS 1481
>SB_20073| Best HMM Match : F5_F8_type_C (HMM E-Value=2.9e-18)
Length = 593
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -2
Query: 394 ATGPVMAEPFISPLLLTMTPALSSKYINTPSRLLNGFRCLMTTAGIT 254
AT V A + L T+ PAL++K+IN +R N + L+ +T
Sbjct: 186 ATSMVTAPTSKTSLTTTLRPALTAKHINITNRTANVVKKLIKIGLLT 232
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,883,093
Number of Sequences: 59808
Number of extensions: 389507
Number of successful extensions: 962
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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