Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_L05
         (581 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal prot...   163   8e-41
U40411-2|AAR25660.2|  413|Caenorhabditis elegans Hypothetical pr...    33   0.15 
Z99171-7|CAB16312.1|  188|Caenorhabditis elegans Hypothetical pr...    30   1.0  
Z82051-6|CAB04821.1|  354|Caenorhabditis elegans Hypothetical pr...    28   5.6  
Z75541-6|CAA99857.2|  644|Caenorhabditis elegans Hypothetical pr...    28   5.6  
AF440800-1|AAL28139.1|  644|Caenorhabditis elegans transcription...    28   5.6  

>U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 23 protein.
          Length = 140

 Score =  163 bits (396), Expect = 8e-41
 Identities = 75/87 (86%), Positives = 80/87 (91%)
 Frame = +3

Query: 162 IKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGV 341
           I+GRLNRLP+AG GDM V +VKKGKPELRKKV+  VVIRQRK FRR+DG FIYFEDNAGV
Sbjct: 45  IRGRLNRLPSAGVGDMFVCSVKKGKPELRKKVLQGVVIRQRKQFRRKDGTFIYFEDNAGV 104

Query: 342 IVNNKGEMKGSAITGPVAKECADLWPR 422
           IVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 105 IVNNKGEMKGSAITGPVAKECADLWPR 131



 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 20/24 (83%), Positives = 23/24 (95%)
 Frame = +1

Query: 28 MSKRGRGGSAGAKFRISLGLPAGS 99
          MSKRGRGG++GAKFRISLGLP G+
Sbjct: 1  MSKRGRGGASGAKFRISLGLPVGA 24



 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 18/23 (78%), Positives = 22/23 (95%)
 Frame = +2

Query: 92  LGAVINCADNTGAKNLYVIAVQG 160
           +GAV+NCADNTGAKNL+VI+V G
Sbjct: 22  VGAVMNCADNTGAKNLFVISVYG 44


>U40411-2|AAR25660.2|  413|Caenorhabditis elegans Hypothetical
           protein B0403.5 protein.
          Length = 413

 Score = 33.1 bits (72), Expect = 0.15
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = -3

Query: 156 WTAITYRFFAPVLSAQLITAPSWETQGDTEFRSRGTTTSSLRHF 25
           ++  T  FF PVL+ + +T  +W T       ++ TTT++LR++
Sbjct: 353 YSTSTTPFFRPVLTTRPVTTTTWRTTRRITTTTKPTTTTTLRNY 396


>Z99171-7|CAB16312.1|  188|Caenorhabditis elegans Hypothetical
           protein F47G4.8 protein.
          Length = 188

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 479 TQLLXLNVYSSDRARV*GNTRPQISTFFGYRPCDGRALHFALVI 348
           T LL  ++  S RAR+     P +  F  YRPC  R L +  ++
Sbjct: 80  TTLLGNSIAPSPRARLTSQCSPGLGGFGVYRPCTSRTLPYRQIL 123


>Z82051-6|CAB04821.1|  354|Caenorhabditis elegans Hypothetical
           protein T23D5.9 protein.
          Length = 354

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 347 DYDTRIVLKVYKYSITPSERFPL 279
           DY +  V K+Y YSIT   RFP+
Sbjct: 162 DYMSEPVQKMYNYSITSLPRFPI 184


>Z75541-6|CAA99857.2|  644|Caenorhabditis elegans Hypothetical
           protein F52B5.5a protein.
          Length = 644

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +1

Query: 442 LSLEYTFXISSCVLLSFPSTSKSNPKNYNLRNXHL-QCKCAKLKYT 576
           ++LE  F +++      PSTS S+P N N R   L +C      YT
Sbjct: 443 VNLENMFNVTNTTAQMEPSTSYSSPSNSNNRKRFLNECDSPNNDYT 488


>AF440800-1|AAL28139.1|  644|Caenorhabditis elegans transcription
           factor CEP-1 protein.
          Length = 644

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +1

Query: 442 LSLEYTFXISSCVLLSFPSTSKSNPKNYNLRNXHL-QCKCAKLKYT 576
           ++LE  F +++      PSTS S+P N N R   L +C      YT
Sbjct: 443 VNLENMFNVTNTTAQMEPSTSYSSPSNSNNRKRFLNECDSPNNDYT 488


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,969,403
Number of Sequences: 27780
Number of extensions: 275692
Number of successful extensions: 745
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)