Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_L04
(511 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein S11|Schizosac... 152 3e-38
SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein S11|Sch... 152 3e-38
SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit S17... 33 0.019
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces... 29 0.40
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c... 25 6.6
SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit Gsa1... 25 6.6
SPAC5H10.02c |||ThiJ domain protein|Schizosaccharomyces pombe|ch... 25 6.6
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 25 6.6
>SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein
S11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 152
Score = 152 bits (368), Expect = 3e-38
Identities = 69/108 (63%), Positives = 84/108 (77%)
Frame = +3
Query: 42 TEKAFQKQATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIRG 221
+E+AFQKQ +F N K G R R +K+VGLGFKTP EAI G Y+DKKCPF G VSIRG
Sbjct: 9 SERAFQKQPHIFQNAKKGAGR---RWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQVSIRG 65
Query: 222 RILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFXKRHRNMSVHLSPCFR 365
RILTG V KM RTI+IRR+YLH++PKYNR+ KRH+N++ H+SP FR
Sbjct: 66 RILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFR 113
Score = 48.0 bits (109), Expect = 8e-07
Identities = 19/23 (82%), Positives = 23/23 (100%)
Frame = +1
Query: 379 GDIVTIGECRPLSKTVRFNVLKV 447
GD+VT+G+CRPLSKTVRFNVL+V
Sbjct: 117 GDVVTVGQCRPLSKTVRFNVLRV 139
>SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein
S11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 152
Score = 152 bits (368), Expect = 3e-38
Identities = 69/108 (63%), Positives = 84/108 (77%)
Frame = +3
Query: 42 TEKAFQKQATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIRG 221
+E+AFQKQ +F N K G R R +K+VGLGFKTP EAI G Y+DKKCPF G VSIRG
Sbjct: 9 SERAFQKQPHIFQNAKKGAGR---RWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQVSIRG 65
Query: 222 RILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFXKRHRNMSVHLSPCFR 365
RILTG V KM RTI+IRR+YLH++PKYNR+ KRH+N++ H+SP FR
Sbjct: 66 RILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFR 113
Score = 48.0 bits (109), Expect = 8e-07
Identities = 19/23 (82%), Positives = 23/23 (100%)
Frame = +1
Query: 379 GDIVTIGECRPLSKTVRFNVLKV 447
GD+VT+G+CRPLSKTVRFNVL+V
Sbjct: 117 GDVVTVGQCRPLSKTVRFNVLRV 139
>SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit
S17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 90
Score = 33.5 bits (73), Expect = 0.019
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 376 IGDIVTIGECRPLSKTVRFNVLKV 447
+GD VTI CRP S T RF ++K+
Sbjct: 51 VGDAVTIQPCRPRSATKRFEIIKI 74
>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 967
Score = 29.1 bits (62), Expect = 0.40
Identities = 17/43 (39%), Positives = 17/43 (39%)
Frame = -2
Query: 159 PLWEF*SLNQHSYGDACPSSSCHLSCSGKRWPVSETLSLSXPP 31
P W HSYG P S H S S PVS T PP
Sbjct: 427 PEWMLPDKRSHSYGS--PKSLHHKSSSAGERPVSPTFVADIPP 467
>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 25.0 bits (52), Expect = 6.6
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +1
Query: 334 ICPCICRLASGHVE 375
+ PC CRLA+ HVE
Sbjct: 527 LLPCPCRLATTHVE 540
>SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit
Gsa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 25.0 bits (52), Expect = 6.6
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -2
Query: 171 YPQSPLWEF*SLNQHSYGDACPSSSCHLSCSGK 73
YP W+ +++ CPS S HL+ S K
Sbjct: 299 YPSQEAWDMRLTIENTLAIKCPSISTHLAGSKK 331
>SPAC5H10.02c |||ThiJ domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 240
Score = 25.0 bits (52), Expect = 6.6
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = +3
Query: 54 FQKQATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEG-TYIDKKCPFTGNVSIRGRIL 230
+ K T F N+ G K M K G+ A G T+ID P I G+I+
Sbjct: 163 YHKHVTAF-NKAGEEKMGVMDELKKRGMKSLNEIFAEAGATFIDPPNPNVNFTQIDGKIV 221
Query: 231 TGV 239
TGV
Sbjct: 222 TGV 224
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 25.0 bits (52), Expect = 6.6
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 370 VEIGDIVTIGECRPLSKTVRFNVL 441
V +GDIVTI C + R +VL
Sbjct: 114 VRLGDIVTINPCPDIKYAERISVL 137
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,972,104
Number of Sequences: 5004
Number of extensions: 37961
Number of successful extensions: 101
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -