Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_L04
(511 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26249| Best HMM Match : No HMM Matches (HMM E-Value=.) 171 4e-43
SB_17063| Best HMM Match : Ribosomal_S17 (HMM E-Value=5.7e-06) 34 0.059
SB_46844| Best HMM Match : VWA (HMM E-Value=1.3e-31) 31 0.55
SB_18810| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_43823| Best HMM Match : MAM (HMM E-Value=0) 29 2.2
SB_39731| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23) 28 3.9
SB_15022| Best HMM Match : Zona_pellucida (HMM E-Value=5.6e-38) 27 6.8
SB_31205| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0
>SB_26249| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 171
Score = 171 bits (415), Expect = 4e-43
Identities = 86/134 (64%), Positives = 102/134 (76%), Gaps = 18/134 (13%)
Frame = +3
Query: 30 MADXTEKAFQKQATVFLNRKGGM----KRKDMRHHKNVGLGFKTP------------REA 161
MA+ TE+A+QKQA +F NRK + K+KD+R +NVGLGFKTP REA
Sbjct: 1 MAEQTERAYQKQAPIFQNRKRVLGQVTKKKDLRFVRNVGLGFKTPKDVCNCTYLLPEREA 60
Query: 162 IEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFXKRHRNMS 341
IEGTYIDKKCPFTGNVSIRGRILTG+ + MKM+RTI+IRRDYLHY+ KYNRF KRH+N++
Sbjct: 61 IEGTYIDKKCPFTGNVSIRGRILTGICRSMKMKRTIIIRRDYLHYIKKYNRFEKRHKNLA 120
Query: 342 VHLSPCFR--ARGD 377
H SPCFR A GD
Sbjct: 121 AHCSPCFRDIALGD 134
Score = 50.0 bits (114), Expect = 1e-06
Identities = 19/26 (73%), Positives = 25/26 (96%)
Frame = +1
Query: 370 VEIGDIVTIGECRPLSKTVRFNVLKV 447
+ +GD++T+G+CRPLSKTVRFNVLKV
Sbjct: 130 IALGDLITVGQCRPLSKTVRFNVLKV 155
>SB_17063| Best HMM Match : Ribosomal_S17 (HMM E-Value=5.7e-06)
Length = 73
Score = 34.3 bits (75), Expect = 0.059
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = +1
Query: 379 GDIVTIGECRPLSKTVRFNVLKV 447
GD+V I ECRPLSK +FNV ++
Sbjct: 29 GDVVRIKECRPLSKMKKFNVEEI 51
>SB_46844| Best HMM Match : VWA (HMM E-Value=1.3e-31)
Length = 332
Score = 31.1 bits (67), Expect = 0.55
Identities = 16/62 (25%), Positives = 30/62 (48%)
Frame = +3
Query: 204 NVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFXKRHRNMSVHLSPCFRARGDW* 383
N++IR + + + +Q + R DY+ + ++ K HR++S + A DW
Sbjct: 148 NIAIRAVGIGKEIDERALQTLVSNRNDYIFRVGSFDALSKLHRSLSQSICGTVGA-PDWL 206
Query: 384 YC 389
YC
Sbjct: 207 YC 208
>SB_18810| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 29.1 bits (62), Expect = 2.2
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Frame = -2
Query: 135 NQHSYGDACPSSSCHLS---CSGKRWPVSETLSLSXPPFCVD 19
N HS D CP+S C+L C + ++ TL P C D
Sbjct: 33 NDHSDEDDCPNSDCNLEQIYCPVSQKCLNRTLQCDGKPDCSD 74
>SB_43823| Best HMM Match : MAM (HMM E-Value=0)
Length = 1724
Score = 29.1 bits (62), Expect = 2.2
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Frame = -2
Query: 135 NQHSYGDACPSSSCHLS---CSGKRWPVSETLSLSXPPFCVD 19
N HS D CP+S C+L C + ++ TL P C D
Sbjct: 1330 NDHSDEDDCPNSDCNLEQIYCPVSQKCLNRTLQCDGKPDCSD 1371
>SB_39731| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 28.7 bits (61), Expect = 2.9
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -2
Query: 180 QCRYPQSPLWEF*SLNQHSYGDACP 106
+C QS LWE SL QH Y + P
Sbjct: 505 KCNALQSSLWELKSLQQHYYPEVSP 529
>SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)
Length = 378
Score = 28.3 bits (60), Expect = 3.9
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +3
Query: 48 KAFQKQATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKK-CPFTGNVSIRGR 224
+A + T ++RK K+K+ + KN+ K PR T++ + G V++R R
Sbjct: 216 QALAMKVTSRVSRKIDSKKKNKQRRKNLRALRKAPRRPAPVTHLSARGADVDGAVALRAR 275
Query: 225 ILTGVVQK 248
G Q+
Sbjct: 276 ARAGNAQR 283
>SB_15022| Best HMM Match : Zona_pellucida (HMM E-Value=5.6e-38)
Length = 525
Score = 27.5 bits (58), Expect = 6.8
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +3
Query: 225 ILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFXKRHRNMSVHLSPCF 362
I+ VV K K + VI RD+ Y ++ +R VH SP F
Sbjct: 64 IMNKVVPKEKEDKNKVITRDHQAYFAFSCKYHRRMVLTVVHFSPSF 109
>SB_31205| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1528
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -3
Query: 479 LKDFFEPLPFETFKTLNLTVLDKGLHS 399
+K+F + L FET K+L L L +G+ S
Sbjct: 1349 VKEFIDTLDFETIKSLCLKSLQRGVGS 1375
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,003,920
Number of Sequences: 59808
Number of extensions: 299272
Number of successful extensions: 702
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -