Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_L03
(510 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_02_0040 + 4482853-4482988,4483111-4483224,4485372-4485514 170 6e-43
03_02_0370 + 7853646-7853772,7854508-7854621,7855152-7855294 169 1e-42
06_01_0239 - 1819316-1819458,1820578-1820691,1820794-1820923 167 5e-42
03_02_0020 - 5045900-5046211,5046233-5046290,5046604-5047242,504... 52 4e-07
11_06_0743 + 26847652-26849424 30 0.94
07_01_0344 - 2490700-2493249 30 0.94
06_02_0345 + 14833838-14833997,14834095-14834552,14834633-148348... 29 1.6
05_05_0253 - 23632907-23633646,23633758-23635050,23636471-23636663 29 1.6
12_02_0964 - 24860373-24860381,24860427-24860768,24861436-248615... 29 2.2
11_03_0196 - 11490624-11490923,11493561-11493599,11494091-11494897 29 2.9
11_01_0676 - 5511755-5511831,5512857-5513052,5513462-5513577,551... 28 5.0
03_06_0314 - 33077621-33077869,33078218-33078280,33079392-330794... 28 5.0
01_05_0426 + 22042215-22042595,22044846-22045688 27 6.6
>10_02_0040 + 4482853-4482988,4483111-4483224,4485372-4485514
Length = 130
Score = 170 bits (413), Expect = 6e-43
Identities = 79/121 (65%), Positives = 98/121 (80%)
Frame = +1
Query: 106 AAAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMP 285
A + G + +A ++RIRITL+S+NV++LEKVCADL+ GAK ++LRVKGPVR+P
Sbjct: 9 AGGAMKGGKLGMEEARELQLNRIRITLSSKNVKNLEKVCADLVKGAKDKQLRVKGPVRIP 68
Query: 286 TKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVXVEVTIA 465
TK+L ITTRK+PCGEG+ TWDRF+ RIHKRVIDL S ++VKQITSI IEPGV VEVTIA
Sbjct: 69 TKVLHITTRKSPCGEGTNTWDRFEFRIHKRVIDLISSPDVVKQITSITIEPGVEVEVTIA 128
Query: 466 D 468
D
Sbjct: 129 D 129
>03_02_0370 + 7853646-7853772,7854508-7854621,7855152-7855294
Length = 127
Score = 169 bits (411), Expect = 1e-42
Identities = 83/126 (65%), Positives = 101/126 (80%), Gaps = 4/126 (3%)
Frame = +1
Query: 103 MAAAVV----SGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKG 270
MAAA V G + +A ++RIRITL+S+NV++LEKVCADL+ GAK ++LRVKG
Sbjct: 1 MAAAAVYGGMKGGKLGVEEAHELQLNRIRITLSSKNVKNLEKVCADLVKGAKDKQLRVKG 60
Query: 271 PVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVXV 450
PVR+PTK+L ITTRK+PCGEG+ TWDRF+ RIHKRVIDL S ++VKQITSI IEPGV V
Sbjct: 61 PVRIPTKVLHITTRKSPCGEGTNTWDRFEFRIHKRVIDLISSPDVVKQITSITIEPGVEV 120
Query: 451 EVTIAD 468
EVTIAD
Sbjct: 121 EVTIAD 126
>06_01_0239 - 1819316-1819458,1820578-1820691,1820794-1820923
Length = 128
Score = 167 bits (406), Expect = 5e-42
Identities = 80/121 (66%), Positives = 99/121 (81%)
Frame = +1
Query: 106 AAAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMP 285
A + SGK + EV HRIRITL+S++V++LEKVC DL+ GAK + L+VKGPVRMP
Sbjct: 9 APPMKSGKIGFESSQEVQ--HRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVRMP 66
Query: 286 TKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVXVEVTIA 465
TK+L ITTRK+PCGEG+ TWDRF+MR+HKRVIDL S +++VKQITSI IEPGV VEVTI+
Sbjct: 67 TKVLHITTRKSPCGEGTNTWDRFEMRVHKRVIDLVSSADVVKQITSITIEPGVEVEVTIS 126
Query: 466 D 468
D
Sbjct: 127 D 127
>03_02_0020 -
5045900-5046211,5046233-5046290,5046604-5047242,
5048475-5048515,5048672-5048728,5048952-5049140
Length = 431
Score = 51.6 bits (118), Expect = 4e-07
Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Frame = +1
Query: 154 VSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEG 333
++P +IRI L S V +E C +I AK + GPV +PTK +P
Sbjct: 329 LAPKQKIRIKLRSYWVPLIEDSCKKIIEAAKTTNAKTMGPVPLPTKRRVYCVLNSPHVHK 388
Query: 334 SKTWDRFQMRIHKRVIDLHSP-SEIVKQITSINIEPGVXVEVTI 462
+ F++R H+R+ID+ P ++ + + + + GV VEV +
Sbjct: 389 DSRF-HFEIRTHQRLIDIMYPTAQTIDSLMQLQLPAGVDVEVKL 431
>11_06_0743 + 26847652-26849424
Length = 590
Score = 30.3 bits (65), Expect = 0.94
Identities = 17/58 (29%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
Frame = +3
Query: 84 PEFNKQHGSRCSVRQRHR-ETPGRGLPYPPHQDHSYFSQCALTREGLC*PHQWSQETE 254
PE + RCS R R R P PP + + + G PH WS E
Sbjct: 296 PELRRARSGRCSPRCRRRARAPPSSSTSPPWPEPALPAAARTAAAGRSLPHSWSSRLE 353
>07_01_0344 - 2490700-2493249
Length = 849
Score = 30.3 bits (65), Expect = 0.94
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -2
Query: 170 RWIGETSAWGFSMSLPDTTAAA 105
RWIG++S F++SLP T A A
Sbjct: 46 RWIGDSSPKNFTLSLPGTVATA 67
>06_02_0345 +
14833838-14833997,14834095-14834552,14834633-14834870,
14834974-14835431,14836554-14836955
Length = 571
Score = 29.5 bits (63), Expect = 1.6
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Frame = +3
Query: 171 HQDHSYFSQCALTREGLC*PHQWSQETEAACKG--PSPH---ANQDPA 299
H S +CAL R+G +W ET C G P+P +QDPA
Sbjct: 11 HHLQSTLFECALLRDGRAESFEWLFETFKNCMGNCPTPRCILTDQDPA 58
>05_05_0253 - 23632907-23633646,23633758-23635050,23636471-23636663
Length = 741
Score = 29.5 bits (63), Expect = 1.6
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +3
Query: 99 QHGSRCSVRQRHRETPGRGLPYPPHQDHSYFSQCALTR 212
+H SRCS R R R T P QD + + CA T+
Sbjct: 676 RHSSRCSCRYRSRRTRSPSSLTPRDQDGTGDAGCATTK 713
>12_02_0964 -
24860373-24860381,24860427-24860768,24861436-24861583,
24862070-24862089
Length = 172
Score = 29.1 bits (62), Expect = 2.2
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +3
Query: 78 SRPEFNKQHGSRCSVRQRHRETPGRGLPYPPHQDH 182
+RPE GSR + R+ R G P PPH H
Sbjct: 90 ARPEAAAGGGSRGTARRILRSASGSATPLPPHHLH 124
>11_03_0196 - 11490624-11490923,11493561-11493599,11494091-11494897
Length = 381
Score = 28.7 bits (61), Expect = 2.9
Identities = 25/109 (22%), Positives = 50/109 (45%), Gaps = 7/109 (6%)
Frame = -2
Query: 473 YASAMVTSTXTPG-SMLIEVICFTISEGECRSITLL-W-----IRI*KRSQVFEPSPQGV 315
Y + + T P +++++ C+T+S E S+ L W ++I + + PS +
Sbjct: 251 YVAGDLFHTVPPAQAVMLKRFCYTLSSREMISLVLHHWSDDDCVKILTQCRKAIPSREEG 310
Query: 314 FRVVIRRILVGMRTGPFTRSFCFLAPLMRSAQTFSSERTLREVRVILMR 168
+V+I ILVG GP + ++ T +R R+ R + ++
Sbjct: 311 GKVIIIEILVGPSLGPVMFEAQLMMDMLMLVNTRGRQRDERDWRDLFLK 359
>11_01_0676 -
5511755-5511831,5512857-5513052,5513462-5513577,
5513752-5514597,5515515-5515766,5522344-5525206
Length = 1449
Score = 27.9 bits (59), Expect = 5.0
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +3
Query: 105 GSRCSVRQRHRETPGRGLPYPP 170
G CS R+RHR G LP+ P
Sbjct: 73 GVTCSRRRRHRRVTGLSLPHTP 94
>03_06_0314 -
33077621-33077869,33078218-33078280,33079392-33079449,
33079534-33079688,33079797-33080106,33080634-33080890,
33081280-33081359,33083888-33083948
Length = 410
Score = 27.9 bits (59), Expect = 5.0
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 198 CALTREGLC*PHQWSQETEAACKGPSP 278
C L EGL +W++ A +GPSP
Sbjct: 155 CRLAAEGLVTASKWARPGRAGTRGPSP 181
>01_05_0426 + 22042215-22042595,22044846-22045688
Length = 407
Score = 27.5 bits (58), Expect = 6.6
Identities = 14/43 (32%), Positives = 15/43 (34%)
Frame = +3
Query: 177 DHSYFSQCALTREGLC*PHQWSQETEAACKGPSPHANQDPAYH 305
DH A TR G+ E P PH PAYH
Sbjct: 13 DHGVRQVWADTRHGIAGGEHERVHAETFALAPQPHKQHRPAYH 55
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,600,329
Number of Sequences: 37544
Number of extensions: 334008
Number of successful extensions: 937
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 936
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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