Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_K23
         (665 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    72   4e-15
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    24   1.3  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    23   1.7  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    23   1.7  
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    22   5.2  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    21   9.1  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 72.1 bits (169), Expect = 4e-15
 Identities = 47/156 (30%), Positives = 80/156 (51%), Gaps = 10/156 (6%)
 Frame = +3

Query: 228 TFTSMLLSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALE 407
           +F +  L    L  +  SG+ KP+ IQ + +P+   G DL+  A++G+GKT  F +  + 
Sbjct: 159 SFETSGLRPHLLENVKKSGYTKPTAIQKYAIPVILSGRDLMSCAQTGSGKTAAFMLPIIH 218

Query: 408 KL--------NLNNGLQ--VMILTPTREIXXQICDVIKQIGSHHXGLNVEXVMGGLSVNE 557
            L          NN  Q  V+I++PTRE+  QI D  K+  +++  + V  + GG S N 
Sbjct: 219 NLLSDKNPPNTENNCAQPVVVIMSPTRELAIQIADQGKKF-AYNSTVKVAVIYGGTSTNH 277

Query: 558 XIXXXXXXVHIVVGSPGRLKHLIVXNHINLSDVQLF 665
                    HI+V +PGRLK  +   +++ + ++ F
Sbjct: 278 QRGRILGGCHILVATPGRLKDFVNRGNVSFNSLKYF 313


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +3

Query: 399 ALEKLNLNNGLQVMI 443
           A EKLN+N+GLQ+ +
Sbjct: 239 AYEKLNVNDGLQLWV 253


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = +2

Query: 59  NYFNEKSQRTLG-NHPIFQNRINHFLKTAGY 148
           NY N + Q     NHP  +N INH     GY
Sbjct: 351 NYPNPQQQYYYNKNHPNSENYINHQNYVQGY 381


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = +2

Query: 59  NYFNEKSQRTLG-NHPIFQNRINHFLKTAGY 148
           NY N + Q     NHP  +N INH     GY
Sbjct: 299 NYPNPQQQYYYNKNHPNSENYINHQNYVQGY 329


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 8/18 (44%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
 Frame = -1

Query: 488 NNIT-YLXXYFSCRCQDH 438
           NN   +L   F+CRC+D+
Sbjct: 165 NNFNVFLRQVFTCRCKDY 182


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = +2

Query: 155 CRYVFTS*YKKQHKDS*CSNSGKCYVH 235
           C+  F   Y      S C N+G+C ++
Sbjct: 25  CKSFFGRTYNNISSISECKNNGECVIN 51


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,046
Number of Sequences: 336
Number of extensions: 2998
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17281430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)