Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_K23
(665 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 107 1e-24
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 90 2e-19
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 87 2e-18
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 82 8e-17
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 80 2e-16
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 76 5e-15
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 68 1e-12
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 65 7e-12
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 65 1e-11
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 63 4e-11
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 62 7e-11
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 62 9e-11
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 61 1e-10
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 58 2e-09
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 57 3e-09
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 56 3e-09
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 54 2e-08
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 53 3e-08
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 53 4e-08
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 51 2e-07
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 47 3e-06
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 43 5e-05
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy... 29 0.60
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 27 2.4
SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces pomb... 27 3.2
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 27 3.2
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 27 3.2
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac... 26 5.6
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54... 25 7.4
SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase |Sch... 25 9.8
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe... 25 9.8
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch... 25 9.8
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 107 bits (257), Expect = 1e-24
Identities = 61/166 (36%), Positives = 86/166 (51%), Gaps = 1/166 (0%)
Frame = +3
Query: 171 PHDIRNSTRTRDVQIVENVTFTSMLLSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLL 350
P D+R +T DV F L L G+ +GF++PSPIQ +P+ G D+L
Sbjct: 28 PVDMR--PKTEDVTKTRGTEFEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDIL 85
Query: 351 LEAKSGTGKTVVFSIIALEKLNLNNG-LQVMILTPTREIXXQICDVIKQIGSHHXGLNVE 527
AK+GTGKT F I +LEK++ +Q +IL PTRE+ Q V K +G H + V
Sbjct: 86 ARAKNGTGKTAAFVIPSLEKVDTKKSKIQTLILVPTRELALQTSQVCKTLGK-HMNVKVM 144
Query: 528 XVMGGLSVNEXIXXXXXXVHIVVGSPGRLKHLIVXNHINLSDVQLF 665
GG ++ + I VHIVVG+PGR+ L + S+ F
Sbjct: 145 VTTGGTTLRDDIIRLNDTVHIVVGTPGRVLDLAGKGVADFSECTTF 190
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 90.2 bits (214), Expect = 2e-19
Identities = 53/158 (33%), Positives = 86/158 (54%), Gaps = 1/158 (0%)
Frame = +3
Query: 192 TRTRDVQIVENVTFTSMLLSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGT 371
T + DV V + F M L E L G+ + G++ PS +Q + G D++ +A+SGT
Sbjct: 12 TTSEDVNAVSS--FEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGT 69
Query: 372 GKTVVFSIIALEKLNLN-NGLQVMILTPTREIXXQICDVIKQIGSHHXGLNVEXVMGGLS 548
GKT FSI L+ ++L+ Q +IL+PTRE+ QI +V+ +G H + +GG S
Sbjct: 70 GKTATFSIGILQSIDLSVRDTQALILSPTRELAVQIQNVVLALGD-HMNVQCHACIGGTS 128
Query: 549 VNEXIXXXXXXVHIVVGSPGRLKHLIVXNHINLSDVQL 662
V I H+V G+PGR+ +I ++ +V++
Sbjct: 129 VGNDIKKLDYGQHVVSGTPGRVTDMIRRRNLRTRNVKM 166
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 87.4 bits (207), Expect = 2e-18
Identities = 55/149 (36%), Positives = 81/149 (54%), Gaps = 3/149 (2%)
Frame = +3
Query: 228 TFTSMLLSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALE 407
TF M L L G+ + GF++PS IQ + D+L +A+SGTGKT FSI L+
Sbjct: 20 TFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQ 79
Query: 408 KLNLN-NGLQVMILTPTREIXXQICDVIKQIGSHHXGLNVE--XVMGGLSVNEXIXXXXX 578
K++ + Q +IL PTRE+ QI V+ +G +NVE +GG V + +
Sbjct: 80 KIDTSLKQCQALILAPTRELAQQIQKVVVALGDL---MNVECHACIGGTLVRDDMAALQA 136
Query: 579 XVHIVVGSPGRLKHLIVXNHINLSDVQLF 665
VH+VVG+PGR+ +I + VQ+F
Sbjct: 137 GVHVVVGTPGRVHDMIQRRALPTDAVQMF 165
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 81.8 bits (193), Expect = 8e-17
Identities = 50/146 (34%), Positives = 76/146 (52%), Gaps = 3/146 (2%)
Frame = +3
Query: 231 FTSMLLSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEK 410
F SM L++ L + GF+ P+PIQ +PL G D++ A++G+GKT F I +E
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130
Query: 411 LN---LNNGLQVMILTPTREIXXQICDVIKQIGSHHXGLNVEXVMGGLSVNEXIXXXXXX 581
L N+ + +IL+P RE+ Q V+K S L ++GG+S+ E
Sbjct: 131 LKSTLANSNTRALILSPNRELALQTVKVVKDF-SKGTDLRSVAIVGGVSLEEQFSLLSGK 189
Query: 582 VHIVVGSPGRLKHLIVXNHINLSDVQ 659
IVV +PGR HL V + LS ++
Sbjct: 190 PDIVVATPGRFLHLKVEMKLELSSIE 215
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 80.2 bits (189), Expect = 2e-16
Identities = 48/135 (35%), Positives = 71/135 (52%), Gaps = 3/135 (2%)
Frame = +3
Query: 246 LSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEKLNLN- 422
LS L L +GF KP PIQ +P GFD++ +A +G+GKT+ F I LE N
Sbjct: 129 LSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHCLRNV 188
Query: 423 --NGLQVMILTPTREIXXQICDVIKQIGSHHXGLNVEXVMGGLSVNEXIXXXXXXVHIVV 596
+Q +++ PTRE+ QIC + I + V + GGL+V + H+VV
Sbjct: 189 DAKYVQALVVAPTRELAHQICQHFELI-KPSPNIRVMSITGGLAVQKQQRLLNKHPHVVV 247
Query: 597 GSPGRLKHLIVXNHI 641
+PGRL +I N++
Sbjct: 248 ATPGRLWSVINENNL 262
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 75.8 bits (178), Expect = 5e-15
Identities = 46/154 (29%), Positives = 76/154 (49%), Gaps = 4/154 (2%)
Frame = +3
Query: 216 VENVTFTSMLLSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSI 395
+ + F LL L + SGF+ PS +Q +P G D+L +AKSG GKT VF +
Sbjct: 48 IHSTGFRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVL 107
Query: 396 IALEKLNLNNG-LQVMILTPTREIXXQICDVIKQIGSHHXGLNVEXVMGGLSVN---EXI 563
L+++ +G + V++L TRE+ QI + + + + GG+++ E
Sbjct: 108 STLQQIEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAF 167
Query: 564 XXXXXXVHIVVGSPGRLKHLIVXNHINLSDVQLF 665
HIVV +PGRL L+ + ++ V+ F
Sbjct: 168 KDKSKSPHIVVATPGRLNALVREKILKVNSVKHF 201
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 68.1 bits (159), Expect = 1e-12
Identities = 47/148 (31%), Positives = 75/148 (50%), Gaps = 5/148 (3%)
Frame = +3
Query: 186 NSTRTRDVQIVENVTFTSMLLSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKS 365
N++ T D++ F+ + LSE + GF+ + IQ +P G D+L AK+
Sbjct: 81 NASSTSDIE-----KFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKT 135
Query: 366 GTGKTVVFSIIALE-----KLNLNNGLQVMILTPTREIXXQICDVIKQIGSHHXGLNVEX 530
G+GKT+ F I +E K NG V+I++PTRE+ QI V K++ +H
Sbjct: 136 GSGKTLAFLIPTIEMLYALKFKPRNGTGVIIISPTRELALQIFGVAKELLKYHH-QTFGI 194
Query: 531 VMGGLSVNEXIXXXXXXVHIVVGSPGRL 614
V+GG + V+++V +PGRL
Sbjct: 195 VIGGANRRAEADKLVKGVNLLVATPGRL 222
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 65.3 bits (152), Expect = 7e-12
Identities = 41/159 (25%), Positives = 85/159 (53%), Gaps = 13/159 (8%)
Frame = +3
Query: 225 VTFTSMLLSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIAL 404
++F S+ + ++ + + GF+K +P+Q + +PL DL++EA +G+GKT+ + +
Sbjct: 1 MSFQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCF 60
Query: 405 EKLNLNN----GLQVMILTPTREIXXQICDVIKQIGSHHXG-------LNVEXVMGGLS- 548
+K+ + GL +I+ PTRE+ QI +V K++ ++ L + +GG
Sbjct: 61 DKVTRRDTDETGLGALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGT 120
Query: 549 -VNEXIXXXXXXVHIVVGSPGRLKHLIVXNHINLSDVQL 662
N+ +V+G+PGRL ++ +HI+ +++
Sbjct: 121 LTNDLASFREKNPSVVIGTPGRLNEML--SHISSKHLEI 157
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 64.9 bits (151), Expect = 1e-11
Identities = 47/143 (32%), Positives = 71/143 (49%), Gaps = 4/143 (2%)
Frame = +3
Query: 195 RTRDVQIVENVTFTSMLLSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTG 374
+ + + + +F SM LS L GL + GF+ P+ IQ +PL G D++ A +G+G
Sbjct: 249 KEKSMMTTTHSSFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSG 308
Query: 375 KTVVFSIIALEKLNLN----NGLQVMILTPTREIXXQICDVIKQIGSHHXGLNVEXVMGG 542
KT F + LE+L +V+IL PTRE+ Q V +I S + V +GG
Sbjct: 309 KTAAFIVPILERLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIAS-FTDIMVCLCIGG 367
Query: 543 LSVNEXIXXXXXXVHIVVGSPGR 611
LS+ IV+ +PGR
Sbjct: 368 LSLKLQEQELRKRPDIVIATPGR 390
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 62.9 bits (146), Expect = 4e-11
Identities = 42/150 (28%), Positives = 78/150 (52%), Gaps = 4/150 (2%)
Frame = +3
Query: 228 TFTSMLLSEFTLXGLISSGFQKPSPIQLHGVP--LGKCGFDLLLEAKSGTGKTVVFSIIA 401
+F + L L G+ S FQKPS IQ +P L +++ +++SGTGKT F++
Sbjct: 115 SFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTM 174
Query: 402 LEKLNLN-NGLQVMILTPTREIXXQICDVIKQIGSHHXGLNVEXVMGGLSVNEXI-XXXX 575
L +++ + Q + L P+RE+ QI DV+ ++G + V+ G + + +
Sbjct: 175 LSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKY---TEVKTAFG---IKDSVPKGAK 228
Query: 576 XXVHIVVGSPGRLKHLIVXNHINLSDVQLF 665
IV+G+PG + L+ ++ D+++F
Sbjct: 229 IDAQIVIGTPGTVMDLMKRRQLDARDIKVF 258
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 62.1 bits (144), Expect = 7e-11
Identities = 43/149 (28%), Positives = 68/149 (45%), Gaps = 6/149 (4%)
Frame = +3
Query: 228 TFTSMLLSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALE 407
TF + L + GF+ P+PIQ P+ G D++ + +G+GKT+ + + A+
Sbjct: 123 TFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIV 182
Query: 408 KLNL------NNGLQVMILTPTREIXXQICDVIKQIGSHHXGLNVEXVMGGLSVNEXIXX 569
+N +G V++L PTRE+ QI + G N V GG+ I
Sbjct: 183 HINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNT-CVYGGVPRGPQIRD 241
Query: 570 XXXXVHIVVGSPGRLKHLIVXNHINLSDV 656
V I + +PGRL ++ N NL V
Sbjct: 242 LIRGVEICIATPGRLLDMLDSNKTNLRRV 270
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 61.7 bits (143), Expect = 9e-11
Identities = 40/137 (29%), Positives = 73/137 (53%), Gaps = 1/137 (0%)
Frame = +3
Query: 228 TFTSMLLSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALE 407
+F+ + +S + + L + +P+ IQ + G + + AK+G+GKT F++ +E
Sbjct: 8 SFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIE 67
Query: 408 KLNLN-NGLQVMILTPTREIXXQICDVIKQIGSHHXGLNVEXVMGGLSVNEXIXXXXXXV 584
K + + +G+ +ILTPTRE+ QI + +G+ + L ++GG+ +
Sbjct: 68 KWSKDPSGIFALILTPTRELAIQIDEQFAALGA-NLNLKHALIVGGMDMIRQSIDLSKRP 126
Query: 585 HIVVGSPGRLKHLIVXN 635
H+VV +PGRL LI N
Sbjct: 127 HVVVATPGRLADLIRSN 143
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 61.3 bits (142), Expect = 1e-10
Identities = 34/112 (30%), Positives = 62/112 (55%), Gaps = 1/112 (0%)
Frame = +3
Query: 282 GFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEKL-NLNNGLQVMILTPTR 458
GF+ P+PIQ +P+ D++ A++G+GKT F++ +++L N + ++L PTR
Sbjct: 65 GFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQELWNNPSPFFAVVLAPTR 124
Query: 459 EIXXQICDVIKQIGSHHXGLNVEXVMGGLSVNEXIXXXXXXVHIVVGSPGRL 614
E+ QI + + IG G+ ++GG+ + H++V +PGRL
Sbjct: 125 ELAYQISEQFEAIGG-SIGVRSVVIVGGMDMVTQAVALSKKPHVLVCTPGRL 175
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 57.6 bits (133), Expect = 2e-09
Identities = 41/128 (32%), Positives = 68/128 (53%), Gaps = 4/128 (3%)
Frame = +3
Query: 285 FQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEKLN-LNNGL---QVMILTP 452
+++P+PIQ P G D++ A++G+GKTV F I AL+ LN L++ +V++++P
Sbjct: 185 YKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQYLNGLSDNKSVPRVLVVSP 244
Query: 453 TREIXXQICDVIKQIGSHHXGLNVEXVMGGLSVNEXIXXXXXXVHIVVGSPGRLKHLIVX 632
TRE+ Q + + + L V GG +E +++G+PGRL LI
Sbjct: 245 TRELAIQTYENLNSL-IQGTNLKAVVVYGGAPKSEQ-ARAAKNASVIIGTPGRLLDLIND 302
Query: 633 NHINLSDV 656
I+ S V
Sbjct: 303 GSIDCSQV 310
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 56.8 bits (131), Expect = 3e-09
Identities = 42/150 (28%), Positives = 78/150 (52%), Gaps = 6/150 (4%)
Frame = +3
Query: 231 FTSMLLSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEK 410
F + L++ T L ++ F + IQ +P G D+L AK+G+GKT+ F + +E
Sbjct: 41 FAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIEN 100
Query: 411 LNLN-----NGLQVMILTPTREIXXQICDVIKQIGSHHXGLNVEXVMGGLSVNEXIXXXX 575
L +GL ++++PTRE+ Q + + +IG H + ++GG + E
Sbjct: 101 LYRKKWTSLDGLGALVISPTRELAIQTFETLVKIGRLH-SFSAGLIIGGNNYKEE-KERL 158
Query: 576 XXVHIVVGSPGR-LKHLIVXNHINLSDVQL 662
++I+V +PGR L+H+ + + S +Q+
Sbjct: 159 SRMNILVCTPGRLLQHIDQAVNFDTSGLQM 188
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 56.4 bits (130), Expect = 3e-09
Identities = 45/154 (29%), Positives = 69/154 (44%), Gaps = 7/154 (4%)
Frame = +3
Query: 195 RTRDVQIVENVTFTSML-LSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGT 371
+ R + + VT S LS T+ + S G++KP+ IQ +P G D++ AK+G+
Sbjct: 407 KIRGIDCPKPVTSWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGS 466
Query: 372 GKTVVF------SIIALEKLNLNNGLQVMILTPTREIXXQICDVIKQIGSHHXGLNVEXV 533
GKT+ F I L G +I+TPTRE+ QI K +
Sbjct: 467 GKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQIFRECKPF-LKLLNIRACCA 525
Query: 534 MGGLSVNEXIXXXXXXVHIVVGSPGRLKHLIVXN 635
GG + + I IVV +PGR+ ++ N
Sbjct: 526 YGGAPIKDQIADLKRGAEIVVCTPGRMIDVLSAN 559
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 54.0 bits (124), Expect = 2e-08
Identities = 41/119 (34%), Positives = 60/119 (50%), Gaps = 9/119 (7%)
Frame = +3
Query: 285 FQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVF---SIIALEKL------NLNNGLQV 437
+++PS IQ +P+ DL+ A++G+GKT F IIA+ KL N++ G
Sbjct: 269 YKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYA 328
Query: 438 MILTPTREIXXQICDVIKQIGSHHXGLNVEXVMGGLSVNEXIXXXXXXVHIVVGSPGRL 614
++L PTRE+ QI V + G V+GG + E HIVV +PGRL
Sbjct: 329 VVLAPTRELAQQI-QVEGNKFAEPLGFRCVSVVGGHAFEEQSFQMSQGAHIVVATPGRL 386
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 53.2 bits (122), Expect = 3e-08
Identities = 40/135 (29%), Positives = 75/135 (55%), Gaps = 9/135 (6%)
Frame = +3
Query: 246 LSEFTLXGLISSGFQKPSPIQLHGV-PLGKCGFDLLLEAKSGTGKTVVFSIIALE----- 407
LS L +GF+K +P+Q + + + +++AK+GTGKT+ F ++A +
Sbjct: 45 LSSTFKNSLSRAGFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAFKDVLKG 104
Query: 408 KLNLNNG-LQVMILTPTREIXXQICDVIKQIGSHHXGLNVEXVMGGLS-VNEXIXXXXXX 581
K LN+ + +IL+PTRE+ QI + +++ ++ G+ V +GG S + E
Sbjct: 105 KPRLNSSKIHSVILSPTRELALQIFEEARKL-TYGTGIRVSYAIGGNSKMREENAIRRGN 163
Query: 582 VHIVVGSPGRLK-HL 623
++++ +PGRL+ HL
Sbjct: 164 ANLLIATPGRLEDHL 178
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 52.8 bits (121), Expect = 4e-08
Identities = 43/162 (26%), Positives = 79/162 (48%), Gaps = 19/162 (11%)
Frame = +3
Query: 231 FTSMLLSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTV--VFSIIAL 404
FTS L+ L + SG+ +P+P+Q + +P+ G DL+ A++G+GKT +F I++L
Sbjct: 171 FTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILSL 230
Query: 405 E--------KLNLNNGL---------QVMILTPTREIXXQICDVIKQIGSHHXGLNVEXV 533
++ + G+ +IL PTRE+ QI + ++ + + V
Sbjct: 231 AFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESRKF-CYRSWVRPCAV 289
Query: 534 MGGLSVNEXIXXXXXXVHIVVGSPGRLKHLIVXNHINLSDVQ 659
GG + I ++ +PGRL LI I+L++++
Sbjct: 290 YGGADIRAQIRQIDQGCDLLSATPGRLVDLIDRGRISLANIK 331
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 50.8 bits (116), Expect = 2e-07
Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 7/97 (7%)
Frame = +3
Query: 228 TFTSMLLSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALE 407
TF+ L + F+KP+ +Q +PL G DL+ +A++G+GKT + I LE
Sbjct: 15 TFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPILE 74
Query: 408 KL-------NLNNGLQVMILTPTREIXXQICDVIKQI 497
L G+ ++L PTRE+ Q+ +V++++
Sbjct: 75 LLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKL 111
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 46.8 bits (106), Expect = 3e-06
Identities = 34/118 (28%), Positives = 66/118 (55%), Gaps = 12/118 (10%)
Frame = +3
Query: 342 DLLLEAKSGTGKTVVFSIIALEKL-----NLN---NGLQVMILTPTREIXXQICDVIKQI 497
D +EA++G+GKT+ + + +++L NL+ +G+ +I+ PTRE+ QI +V ++
Sbjct: 180 DAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIYNVANKL 239
Query: 498 GSH---HXGLNVEXVMGGLSVNEXIXXXXXXVHIVVGSPGRL-KHLIVXNHINLSDVQ 659
++ H ++ V+GG V+I++G+PGRL HL +++S V+
Sbjct: 240 NNNPLSHWIVSCN-VIGGEKKKSEKARIRKGVNILIGTPGRLADHLENTEALDVSQVR 296
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 42.7 bits (96), Expect = 5e-05
Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 2/110 (1%)
Frame = +3
Query: 303 IQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALEKLNLN--NGLQVMILTPTREIXXQI 476
IQ + +P DLL A +G+GKT+ + L+KL L+ G + +I+ PTRE+ QI
Sbjct: 72 IQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVPGGYRAIIVAPTRELCEQI 131
Query: 477 CDVIKQIGSHHXGLNVEXVMGGLSVNEXIXXXXXXVHIVVGSPGRLKHLI 626
+++ +E + E + +G+P RL I
Sbjct: 132 YRQAEKLSFGTSLKIIELSKSNEKIQEKAPKLREKYDMCIGTPMRLVQAI 181
>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 435
Score = 29.1 bits (62), Expect = 0.60
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +2
Query: 287 PKTISNSTSWCPTRQMWFRFVTRSKVWNWKNCCVFYNSIRKTKS 418
P T +SW P +Q + K+WN + CV +++I +S
Sbjct: 87 PPTFFLKSSWLPLKQKRVLTSSLIKLWNEIHDCVLFDAIEHVRS 130
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 27.1 bits (57), Expect = 2.4
Identities = 10/43 (23%), Positives = 24/43 (55%)
Frame = +3
Query: 336 GFDLLLEAKSGTGKTVVFSIIALEKLNLNNGLQVMILTPTREI 464
GF +++ + +GK++++ I L+ L +N + PT+ +
Sbjct: 326 GFHVIVSTSTSSGKSLIYQIPILQSLLEDNQSTAFFVFPTKSL 368
>SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 380
Score = 26.6 bits (56), Expect = 3.2
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 330 KCGFDLLLEAKSGTGKTVVFSII 398
+CG ++L SGTGKT F+ +
Sbjct: 28 ECGLTIMLCGASGTGKTTFFNTL 50
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 26.6 bits (56), Expect = 3.2
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +3
Query: 342 DLLLEAKSGTGKTVVFSIIALEKLNLNNGLQVMILTPTREIXXQ 473
+LLL +G GKT + +++ L +++ L PT+ + Q
Sbjct: 126 NLLLALPTGLGKTFIAAVVMLNYFRWFPESKIIFLAPTKPLLLQ 169
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 26.6 bits (56), Expect = 3.2
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +3
Query: 345 LLLEAKSGTGKTVVFSIIALEKLNLNNGLQVMILTP 452
++L K+G+GK+ +F I+ LN+ V +++P
Sbjct: 2170 IILLGKTGSGKSQIFRILQSALLNIGIDCIVYVISP 2205
>SPCC736.14 |dis1||microtubule-associated protein Dis1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 882
Score = 25.8 bits (54), Expect = 5.6
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 388 NTTVFPVPDFASSNKSKPHLPS 323
NT +P F+S+ K KPHL S
Sbjct: 240 NTQEVVLPSFSSNAKPKPHLSS 261
>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 25.4 bits (53), Expect = 7.4
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +3
Query: 327 GKCGFDLLLEAKSGTGKTV 383
GKCG+ +L + G GKT+
Sbjct: 225 GKCGYSAILADEMGLGKTL 243
>SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 365
Score = 25.0 bits (52), Expect = 9.8
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +3
Query: 348 LLEAKSGTGKTVVFSIIALEKLNLNNGLQVMIL 446
+L+AK G+T+V I + E++ LN G VM L
Sbjct: 28 ILQAKQ-LGETLVIGIHSDEEITLNKGPPVMTL 59
>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 697
Score = 25.0 bits (52), Expect = 9.8
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 315 GVPLGKCGFDLLLEAKSGTGKTVV 386
GV +G DL+L+A+ GT TVV
Sbjct: 233 GVVVGSKIIDLILKAEPGTAATVV 256
>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 25.0 bits (52), Expect = 9.8
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 165 SLPHDIRNSTRTRDVQIVENVTFTSMLLSEFTL 263
S DIRNST TR +++ T+ ++ E+ L
Sbjct: 378 SAVEDIRNSTATRIIEMTSKSTYMNIADFEWLL 410
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,482,054
Number of Sequences: 5004
Number of extensions: 49670
Number of successful extensions: 197
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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