Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_K23
         (665 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       69   4e-14
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           24   0.22 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   2.6  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   6.0  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   6.0  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 68.9 bits (161), Expect = 4e-14
 Identities = 48/155 (30%), Positives = 75/155 (48%), Gaps = 11/155 (7%)
 Frame = +3

Query: 228 TFTSMLLSEFTLXGLISSGFQKPSPIQLHGVPLGKCGFDLLLEAKSGTGKTVVFSIIALE 407
           +F +  L    L  +  SG++KP+P+Q H +P+   G DL+  A++G+GKT  F++  + 
Sbjct: 197 SFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLMACAQTGSGKTAAFAVPIIN 256

Query: 408 KLNLNNGL-----------QVMILTPTREIXXQICDVIKQIGSHHXGLNVEXVMGGLSVN 554
            L L   +           QV+I++PTRE+  QI   I +  S +  L      GG SV 
Sbjct: 257 TL-LERSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQIVKF-SLNSILKTVVAYGGTSVM 314

Query: 555 EXIXXXXXXVHIVVGSPGRLKHLIVXNHINLSDVQ 659
                     HI+V +PGRL   +    +  S VQ
Sbjct: 315 HQRGKLSAGCHILVATPGRLLDFVEKGRVKFSSVQ 349


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 23.8 bits (49), Expect(2) = 0.22
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 332 MWFRFVTRSKVWNW 373
           M+F  VTR  VW W
Sbjct: 447 MFFNMVTRDSVWCW 460



 Score = 21.0 bits (42), Expect(2) = 0.22
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +2

Query: 227 YVHFHASFRIYTXRIDIIGVPKTISNSTSW 316
           + H  +SFR +     I+G  KT   +T +
Sbjct: 392 FFHPMSSFREFAVSTSILGDKKTAEENTDY 421


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +1

Query: 31  PTISF-KLNRKLFQRKKPKNSWEPSNISESNQPLFKDSRLSE 153
           P I+F KL R   + K+P+ ++EP      +   +K+   +E
Sbjct: 145 PRINFTKLKRHHPRYKRPRTTFEPRATDSRHYDRYKEEESNE 186


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/41 (21%), Positives = 19/41 (46%)
 Frame = -2

Query: 496 ICLITSHICXXISRVGVKIITCKPLLRFSFSNAIIENTTVF 374
           I  +   +C    ++   ++T +P L  +F N +    TV+
Sbjct: 234 ITRVIPQVCSGNCKLNDILLTVRPHLELTFENILSHINTVY 274


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/41 (21%), Positives = 19/41 (46%)
 Frame = -2

Query: 496 ICLITSHICXXISRVGVKIITCKPLLRFSFSNAIIENTTVF 374
           I  +   +C    ++   ++T +P L  +F N +    TV+
Sbjct: 234 ITRVIPQVCSGNCKLNDILLTVRPHLELTFENILSHINTVY 274


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,420
Number of Sequences: 438
Number of extensions: 3009
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)