Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_K17
         (639 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    26   0.35 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.47 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.47 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   4.4  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   5.8  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   7.6  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 25.8 bits (54), Expect = 0.35
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 68  DSFETSISQALVELETNSDLKAQLRE 145
           ++  T++S AL EL  N D++ +LRE
Sbjct: 307 ETSSTTMSNALYELALNQDVQKKLRE 332


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 22/73 (30%), Positives = 35/73 (47%)
 Frame = +2

Query: 332 HKTRVANKQKRPRSXTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTT 511
           H     N   +     L S Y+ ++  +V  ++++  R+ +KL  SQLI V+L KNQ  T
Sbjct: 20  HGAVAGNPDAKRLYDDLLSNYNKLVRPVVNTSDVL--RVCIKLKLSQLIDVNL-KNQIMT 76

Query: 512 IEHKVDTFQSVYK 550
               V+     YK
Sbjct: 77  TNLWVEQSWYDYK 89


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 22/73 (30%), Positives = 35/73 (47%)
 Frame = +2

Query: 332 HKTRVANKQKRPRSXTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTT 511
           H     N   +     L S Y+ ++  +V  ++++  R+ +KL  SQLI V+L KNQ  T
Sbjct: 20  HGAVAGNPDAKRLYDDLLSNYNKLVRPVVNTSDVL--RVCIKLKLSQLIDVNL-KNQIMT 76

Query: 512 IEHKVDTFQSVYK 550
               V+     YK
Sbjct: 77  TNLWVEQSWYDYK 89


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 19/57 (33%), Positives = 30/57 (52%)
 Frame = +2

Query: 380 LTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYK 550
           L S Y+ ++  +V   + +   +++KL  SQLI V+L KNQ  T    V+     YK
Sbjct: 32  LLSNYNKLVRPVVNVTDAL--TVKIKLKLSQLIDVNL-KNQIMTTNLWVEQSWYDYK 85


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 538 VCIQEANGTRSYLRVPRTLFVNLAY 612
           VC++   G + YLR+     +NL +
Sbjct: 163 VCLENCTGYQQYLRLLEVPQINLEW 187


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = +1

Query: 4   FPSRKVVNDEYEDHQSERC*GGFLRDLDLAGAGRTRNQLRPQSPTSG 144
           FP+    +DE  +   +R       D D+AG  + ++++ P    SG
Sbjct: 104 FPNSSSSDDERPNSIHQRASFSLNTDGDIAGLRKKKHKVNPLLMQSG 150


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,361
Number of Sequences: 438
Number of extensions: 3157
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)