Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_K13
         (429 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.03 |||ribonucleoprotein |Schizosaccharomyces pombe|chr ...    26   2.9  
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn...    26   2.9  
SPBC19C2.07 |fba1||fructose-bisphosphate aldolase Fba1|Schizosac...    25   6.6  
SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr...    25   6.6  
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit...    25   6.6  
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2...    25   6.6  
SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces ...    24   8.7  
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c...    24   8.7  
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |...    24   8.7  
SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces po...    24   8.7  

>SPCC1450.03 |||ribonucleoprotein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 240

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +3

Query: 165 LKLHTRLQQPA-VLNKRFNLFSTL*VIMPEDKKNQKRNDPKDQRRPRGRRND 317
           ++LH +L Q A ++ K F+L   L +++ +++  Q+R D   +       ND
Sbjct: 90  VQLHEKLVQSAHLMTKIFSLSGKLNMVLSQEEMRQRRLDFSSEDGEEEEEND 141


>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
           synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 252 DKKNQKRNDPKDQRRPRGRRNDAQVTDKKAERK 350
           D++  KRN P       GR  +  V +KK +RK
Sbjct: 13  DRREAKRNRPNSIYNGEGRPENLVVGEKKPKRK 45


>SPBC19C2.07 |fba1||fructose-bisphosphate aldolase
           Fba1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 358

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 337 KQKENLMSPRXMPKAPAKPNVTKKQGPXIFI 429
           K K+ LM+P   P+   KPN  KK  P ++I
Sbjct: 305 KYKDYLMTPVGNPEGADKPN-KKKFDPRVWI 334


>SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 514

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 164 ISCGNFENIVGS*YKRSCGMPTKK 93
           +  GNF +I+   Y +  G+PTK+
Sbjct: 267 VPTGNFGDILAGYYAKRMGLPTKQ 290


>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +1

Query: 286 ISVAHEVAVMMHKSQTRKQKENLMSPRXMPKAPAKP 393
           I   ++ A    K++ +K ++   +P+   +APAKP
Sbjct: 215 IKAENKEAAPAKKAEKKKDEKKKNAPKPQAEAPAKP 250


>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = +1

Query: 247 LKIRKIRNETTLKISVAHEVAVMMHKSQTRKQKENLMSPRXMPKAPAKPN 396
           LK +  R  T L+  +  + A    K Q R  K+N      +PK P  PN
Sbjct: 4   LKKKSKRRTTRLRSRIEKKAAESKRK-QKRADKKNPQWKSRIPKDPGIPN 52


>SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 388

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 8/31 (25%), Positives = 18/31 (58%)
 Frame = -1

Query: 126 IQTQLRHADEERQNTLHKLEIWKLDELKHYL 34
           IQ  L    +  QN+L ++ +W ++ ++ +L
Sbjct: 156 IQVHLHQPSKLTQNSLREMTVWVMETMRLFL 186


>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 334 RKQKENLMSPRXMPKAPAKPN 396
           R  +E++ +P+  PK  +KPN
Sbjct: 49  RSSEESMPAPKLFPKLTSKPN 69


>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 649

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 252 DKKNQKRNDPKDQRRPRGRRN 314
           D +N+  NDP D   P G+ N
Sbjct: 308 DAENENENDPSDFVLPNGQSN 328


>SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 348

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 190 CCSLVCNFKFLVVIL 146
           C  +V NFKF+V+IL
Sbjct: 113 CQHVVANFKFIVIIL 127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,590,904
Number of Sequences: 5004
Number of extensions: 28655
Number of successful extensions: 82
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)