Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_K13
(429 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0478 - 21259376-21259465,21259862-21259924,21260025-212600... 32 0.17
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 29 1.6
12_01_0500 + 3966456-3968556,3968640-3969087,3969524-3969718,396... 29 2.1
05_04_0068 + 17635693-17637204 29 2.1
09_04_0087 + 14476539-14476675,14478876-14479635,14479720-144798... 28 2.8
09_02_0170 - 5273607-5273929,5274272-5274350,5274627-5274629 28 3.7
05_03_0166 + 9088014-9088189,9089561-9089609,9089699-9090007,909... 27 4.9
02_05_0718 + 31203358-31203717,31203826-31204011 27 4.9
10_03_0019 - 7123502-7123673,7124145-7124226,7124228-7124394,712... 27 6.4
01_01_0605 + 4497308-4497472,4497719-4497904,4498898-4499003,449... 27 6.4
07_03_0959 - 22885750-22886001,22886073-22886195,22886343-228864... 27 8.5
>06_03_0478 - 21259376-21259465,21259862-21259924,21260025-21260066,
21260180-21260461,21261084-21261587,21261973-21261981,
21262122-21262196,21262375-21262449,21262557-21263494,
21263577-21263607,21263694-21263979,21264691-21264905,
21265329-21265437,21265556-21265611,21265730-21265822,
21266348-21266393,21266496-21267221,21267489-21267550,
21267738-21268013,21268604-21268735,21268835-21268909
Length = 1394
Score = 32.3 bits (70), Expect = 0.17
Identities = 16/41 (39%), Positives = 27/41 (65%), Gaps = 3/41 (7%)
Frame = +3
Query: 249 EDKKNQKRNDPKDQRRPRGRRNDAQ---VTDKKAERKSDEP 362
+D KN K D K+ ++ R ++ D++ +TD K ++KSDEP
Sbjct: 959 QDGKNDKAKDDKE-KKSRDQKTDSKQKSLTDTKEKKKSDEP 998
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 29.1 bits (62), Expect = 1.6
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +3
Query: 252 DKKNQKRN-DPKDQRRPRGRRNDAQVTDKKAERKSDEPK 365
D +N++R+ P+D R PRG D++ + + + R S PK
Sbjct: 173 DSRNERRSRSPRDSRSPRGSPRDSR-SPRGSPRDSRSPK 210
Score = 27.9 bits (59), Expect = 3.7
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +3
Query: 246 PEDKKNQKRNDPKDQRRPRGRRNDAQVTDKKAERKSDEPKXNA 374
P D ++ R P+D R P+G D Q + + + R S P+ +A
Sbjct: 193 PRDSRSP-RGSPRDSRSPKGSPRDTQ-SPRGSPRDSRSPRRSA 233
>12_01_0500 +
3966456-3968556,3968640-3969087,3969524-3969718,
3969891-3970119
Length = 990
Score = 28.7 bits (61), Expect = 2.1
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +3
Query: 255 KKNQKRNDPKDQRRPRGRRNDAQVTDKKAERKSDEPKXNAESS 383
KKN +P+D + G D T+ KA++ SD+ +A+++
Sbjct: 229 KKNSTAEEPRD-TKDAGENADEASTETKADKSSDDTPTDAKAT 270
>05_04_0068 + 17635693-17637204
Length = 503
Score = 28.7 bits (61), Expect = 2.1
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = -3
Query: 238 TYNVLNKLNRLFNTAGCCSLVCNFKFLVVILKI*WVPNTNAVAACRRRKTEH-FTQIRD 65
T+N +NKL+ L N C S L + + W+P+++ + KT + F+ +D
Sbjct: 207 TWNPMNKLSGLMNVRSCISHASEIIMLSLKKETLWLPDSDEMLQGLLNKTSNIFSTAKD 265
>09_04_0087 + 14476539-14476675,14478876-14479635,14479720-14479871,
14479958-14480024,14480632-14480831,14480915-14481068,
14481585-14481669,14481766-14481857,14482575-14482766,
14482867-14482992,14483072-14483125,14483494-14483550,
14484509-14484606,14484703-14485038,14485116-14485203,
14486891-14487016,14487082-14487138,14488054-14488133,
14488228-14488270,14488948-14489034,14489331-14489420,
14489996-14490054,14490141-14490231,14490330-14490495,
14490662-14490755,14491787-14492909
Length = 1537
Score = 28.3 bits (60), Expect = 2.8
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = +3
Query: 264 QKRNDPKDQRRPRGRRNDAQVTDKKAERK 350
+K+ D KD++R R +++D + +KK +K
Sbjct: 1430 EKKKDKKDKKRHRDKKDDPEYLEKKRLKK 1458
>09_02_0170 - 5273607-5273929,5274272-5274350,5274627-5274629
Length = 134
Score = 27.9 bits (59), Expect = 3.7
Identities = 10/42 (23%), Positives = 21/42 (50%)
Frame = +3
Query: 240 IMPEDKKNQKRNDPKDQRRPRGRRNDAQVTDKKAERKSDEPK 365
+ P D+K +K K ++ + ++ + KK E + + PK
Sbjct: 72 VTPVDEKKEKEEKEKKEKEEKEKKEKEEKEKKKKEEEQNNPK 113
>05_03_0166 +
9088014-9088189,9089561-9089609,9089699-9090007,
9090390-9090438,9090751-9090845,9090952-9091076,
9091369-9091384
Length = 272
Score = 27.5 bits (58), Expect = 4.9
Identities = 19/59 (32%), Positives = 27/59 (45%)
Frame = +3
Query: 171 LHTRLQQPAVLNKRFNLFSTL*VIMPEDKKNQKRNDPKDQRRPRGRRNDAQVTDKKAER 347
L+ Q PAVL N F++L M E P DQR+ R+ + + KK E+
Sbjct: 51 LYMHHQIPAVLQNLENEFASLKEEMTEMALPPGEMKPSDQRKYNTRKREVRRRIKKQEK 109
>02_05_0718 + 31203358-31203717,31203826-31204011
Length = 181
Score = 27.5 bits (58), Expect = 4.9
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +3
Query: 249 EDKKNQKRNDPKD--QRRPRGRRNDAQVTDKKAERKSDEPKXN 371
E K K++D D +R+PR ++ D D ERK K N
Sbjct: 131 ERKPRYKKHDDDDDGERKPRYKKRDDDDDDSDGERKQRYEKNN 173
>10_03_0019 -
7123502-7123673,7124145-7124226,7124228-7124394,
7124569-7125182
Length = 344
Score = 27.1 bits (57), Expect = 6.4
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 279 PKDQRRPRGRRNDAQVTDKKAERKS 353
P+D+ R RGRR D D +A +++
Sbjct: 145 PQDRPRRRGRRQDRPAVDSRARQRN 169
>01_01_0605 +
4497308-4497472,4497719-4497904,4498898-4499003,
4499062-4499216,4499341-4499424,4499498-4499589,
4499729-4499837,4499944-4500030,4500153-4500245,
4501144-4501341,4501481-4501632,4501724-4501874,
4501975-4502073,4502159-4502326,4502624-4502702,
4502870-4503000
Length = 684
Score = 27.1 bits (57), Expect = 6.4
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +3
Query: 255 KKNQKRNDPKDQRRPRGRRNDAQVTDKKAERKSDEP 362
KK + P +R+P+GR D + +DK+ +K +P
Sbjct: 563 KKEASSSKPPVKRKPKGR--DEEGSDKRKPKKKKDP 596
>07_03_0959 -
22885750-22886001,22886073-22886195,22886343-22886429,
22886504-22886555,22886701-22886825,22887002-22887213,
22887317-22887518,22887928-22888032,22889643-22889704,
22889998-22890187,22890260-22890355,22890442-22890544,
22891448-22891551,22893284-22893370,22894033-22894118,
22894397-22894489,22895615-22895777,22895899-22896011,
22896113-22896235,22897393-22897444,22897843-22897886,
22897975-22898048,22898133-22898224,22899374-22899441,
22900817-22900892,22900952-22901215
Length = 1015
Score = 26.6 bits (56), Expect = 8.5
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -1
Query: 114 LRHADEERQNTLHKLEIWKLDELKHYLTLLLXAFI 10
L H DE+ + LH ++I + D+LK + L L A +
Sbjct: 788 LNHQDEKNSSILHYIQIHQ-DDLKQNVLLQLLALV 821
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,814,365
Number of Sequences: 37544
Number of extensions: 166911
Number of successful extensions: 486
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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