Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_K13
         (429 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    24   0.83 
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    23   1.1  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    23   1.1  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   1.4  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    21   4.4  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    21   5.8  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   7.7  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    21   7.7  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 0.83
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -1

Query: 105 ADEERQNTLHKLEIWKLDELKHYLTLL 25
           A+ ER  T+  + +WK +  K+Y+T++
Sbjct: 65  AERERGITID-IALWKFETAKYYVTII 90


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -1

Query: 105 ADEERQNTLHKLEIWKLDELKHYLTLL 25
           A+ ER  T+  + +WK +  K+Y+T++
Sbjct: 8   AERERGITID-IALWKFETSKYYVTII 33


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -1

Query: 105 ADEERQNTLHKLEIWKLDELKHYLTLL 25
           A+ ER  T+  + +WK +  K+Y+T++
Sbjct: 65  AERERGITID-IALWKFETSKYYVTII 90


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
 Frame = +2

Query: 65  ISNLCKVFCLSSSACRNC---VCIRNPLYFQNY 154
           ISN   +FC+S     NC     +  PL+ Q Y
Sbjct: 96  ISNFLMMFCMSPPMVINCYYETWVLGPLFCQIY 128


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +1

Query: 319 HKSQTRKQKENLMSPRXMPKAPAKPNVTKKQGPXI 423
           H ++ +K KE+        KAP + + T K+G  I
Sbjct: 209 HGNKKKKNKEDEDDGATPRKAPPQLSTTDKKGSAI 243


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
          1-alpha protein.
          Length = 172

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 5/16 (31%), Positives = 12/16 (75%)
 Frame = -1

Query: 72 LEIWKLDELKHYLTLL 25
          + +WK +  K+Y+T++
Sbjct: 2  IALWKFETSKYYVTII 17


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 123 VLGTHYIFKITTRNLKLH 176
           VLG  YI  +  ++LK+H
Sbjct: 309 VLGYKYITPLIQKHLKIH 326


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 350 FSFCFLVCDLCIIT 309
           F+F F VC L I+T
Sbjct: 15  FNFVFAVCGLGILT 28


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,518
Number of Sequences: 438
Number of extensions: 2072
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11121030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)