Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_K11
         (557 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch...   185   3e-48
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc...   185   4e-48
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|...    28   1.1  
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su...    27   2.5  
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M...    26   3.3  
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi...    26   3.3  
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces...    25   5.7  
SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.5  
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro...    25   10.0 
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos...    25   10.0 
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    25   10.0 

>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
           L21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 160

 Score =  185 bits (451), Expect = 3e-48
 Identities = 89/149 (59%), Positives = 104/149 (69%), Gaps = 1/149 (0%)
 Frame = +1

Query: 70  AAPAHLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVYNVT 249
           A   + F R FR HG I LSTY+K YKVGDIVDI+ NGAVQKGMPHK YHGKTG VYNVT
Sbjct: 9   ARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVYNVT 68

Query: 250 AHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFXXXXXXXXXXXXEAKAAGKTVNL 429
             ++GV++ K V  R + KR+N+R+EHVKHSKCRQDF            EAKA GKTV L
Sbjct: 69  QSSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKAQGKTVQL 128

Query: 430 KRQPAPPKAAHIVS-GTEKPVLLAPIPYE 513
           +RQPAPP  AH VS    +PV L P+ Y+
Sbjct: 129 RRQPAPPATAHFVSTENNEPVTLHPVAYD 157


>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
           L21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 160

 Score =  185 bits (450), Expect = 4e-48
 Identities = 89/149 (59%), Positives = 104/149 (69%), Gaps = 1/149 (0%)
 Frame = +1

Query: 70  AAPAHLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVYNVT 249
           A   + F R FR HG I LSTY+K YKVGDIVDI+ NGAVQKGMPHK YHGKTG VYNVT
Sbjct: 9   ARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVYNVT 68

Query: 250 AHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFXXXXXXXXXXXXEAKAAGKTVNL 429
             ++GV++ K V  R + KR+N+R+EHVKHSKCRQDF            EAKA GKTV L
Sbjct: 69  QSSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKAQGKTVQL 128

Query: 430 KRQPAPPKAAHIVS-GTEKPVLLAPIPYE 513
           +RQPAPP  AH VS    +PV L P+ Y+
Sbjct: 129 RRQPAPPAKAHFVSTENNEPVTLHPVAYD 157


>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
 Frame = -3

Query: 486 GFLSSTDDVGSFRGSWLSLQVDGLAGSL-GFLQ----*PXILFDSLKEVLSALGVLDMLN 322
           GF S+T    SF+G W+ L +  + G L G LQ        +++SL EV  ++ +   L+
Sbjct: 445 GFASATILPMSFQGGWIDLPIAFILGCLVGILQHYIAPRSTMYNSLFEVTGSI-ITSFLS 503

Query: 321 TDIDALRYN 295
               ++RY+
Sbjct: 504 RAFGSIRYS 512


>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
           subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = -3

Query: 54  EFVIFEPCVTKLDG 13
           EFVIFE C+T+++G
Sbjct: 726 EFVIFEACLTRIEG 739


>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1317

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 20/55 (36%), Positives = 29/55 (52%)
 Frame = -3

Query: 417 LAGSLGFLQ*PXILFDSLKEVLSALGVLDMLNTDIDALRYNPSANTLVDNHTESM 253
           +A SLG  Q   +L      +LSA G   M   D+ +    PS+ TL D++TES+
Sbjct: 509 IAKSLGITQ---VLVHKYSSILSAYG---MALADVVSEVQEPSSFTLDDSNTESI 557


>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
           Usp104|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 695

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = +3

Query: 117 YSALHVHESVQSWRHCRHQRQWCSSKGYATQSIPW 221
           +  L  H    SW   +  R+ C +KGY     PW
Sbjct: 199 FKFLDSHNVNPSWTWEQTVRELCDAKGYYVMKDPW 233


>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 419

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 312 DALRYNPSANTLVDNHTES 256
           D  R N S N ++DNHT++
Sbjct: 29  DPARKNESTNDVIDNHTDT 47


>SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 433

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 397 EAKAAGKTVNLKRQPAPPKAAHIVSGT 477
           + KA  K  +  +QP+PP A H  + T
Sbjct: 344 DTKAGEKLTDSSKQPSPPVAEHFSNET 370


>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
           6-
           hydroxymethyldihydropteridinediphosphokinase/dihydroneop
           terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 11/43 (25%), Positives = 19/43 (44%)
 Frame = -3

Query: 240 VHATCLSMVYFVWHTLLNCTIASDVYNVSNFVHFHVRGERNSS 112
           + + C   V    H  +  T+   V    N +H++   ERNS+
Sbjct: 83  IASLCFEDVIDTSHVSIKLTLPKCVLRSKNGLHYYAERERNST 125


>SPAC328.04 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 10/15 (66%), Positives = 14/15 (93%)
 Frame = +2

Query: 326 SMSSTPSADKTSLRE 370
           SMSS+P+A +TSLR+
Sbjct: 163 SMSSSPTASRTSLRK 177


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1427

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = -3

Query: 441  WLSLQVDGLAGSLGF 397
            WL+++ DG++G +GF
Sbjct: 1085 WLAIRTDGISGLVGF 1099


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,201,330
Number of Sequences: 5004
Number of extensions: 42819
Number of successful extensions: 155
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)