Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_K09
         (467 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein S25|Schizosacc...    66   2e-12
SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein S25|Sc...    65   6e-12
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c...    29   0.47 
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    27   1.1  
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa...    27   1.1  
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    27   1.4  
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo...    27   1.4  
SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomy...    26   2.5  
SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyc...    25   5.8  
SPBC16A3.12c |||triglyceride lipase-cholesterol esterase |Schizo...    25   5.8  
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po...    25   7.6  

>SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein
           S25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 88

 Score = 66.5 bits (155), Expect = 2e-12
 Identities = 30/64 (46%), Positives = 47/64 (73%)
 Frame = -3

Query: 321 LFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVX 142
           +FDK   +++ KEVP +K I+ +V+ +R+K+ GSLAR A+ +L E+G+I++V QH  Q  
Sbjct: 21  VFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLAERGVIQKVDQHSKQAI 80

Query: 141 YTRA 130
           YTRA
Sbjct: 81  YTRA 84


>SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein
           S25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score = 64.9 bits (151), Expect = 6e-12
 Identities = 29/63 (46%), Positives = 46/63 (73%)
 Frame = -3

Query: 321 LFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVX 142
           +FDK   +++ KEVP +K I+ +V+ +R+K+ GSLAR A+ +L E+G+I++V QH  Q  
Sbjct: 21  VFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLAERGVIQKVDQHSKQAI 80

Query: 141 YTR 133
           YTR
Sbjct: 81  YTR 83


>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 554

 Score = 28.7 bits (61), Expect = 0.47
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +2

Query: 197 SMSALLAREPRTFNLSDTTAGVISLYCGTSLYSFSYVGLSNNTWLFNLSRTFPLDHFFFL 376
           S+SA        FNL+    GV ++  G S  +F+ + + +  W F +    P+D   FL
Sbjct: 139 SLSADTIGRRWAFNLTFLFTGVFAVIAGASP-NFASICVFDALWSFGVGGNLPVDSAIFL 197

Query: 377 -ALP 385
            ALP
Sbjct: 198 EALP 201


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 293  SFSYVGLSNNTWLFNLSRTFPLDHFFFLALPPP 391
            SF Y  L NN++L  +S +   ++ F++  PPP
Sbjct: 1008 SFIYGSLQNNSFLSRVSPSSLEENVFYIQHPPP 1040


>SPAC2G11.13 |atg22||autophagy associated protein Atg22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 22/85 (25%), Positives = 38/85 (44%)
 Frame = +2

Query: 98  IVYATGSSPLVARVXITCPWCWTTCLMRPFSLSSMSALLAREPRTFNLSDTTAGVISLYC 277
           I+Y T ++P++  + +T   CW   L  P  L ++  L    P   + SD    ++    
Sbjct: 260 ILYKTNNNPIILPITVTVCSCWWLILSTP--LCTIVTL----PVENHSSDAILTLLYNSV 313

Query: 278 GTSLYSFSYVGLSNNTWLFNLSRTF 352
             S +SF +    ++  LF  SR F
Sbjct: 314 KESYHSFKHAMSISSIRLFLFSRLF 338


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -1

Query: 419 KKHRRRRKDPVAAKPRRRSGPKEKFVTS*TTRC 321
           K HR    DP+   P RR GP  + V +   +C
Sbjct: 203 KVHRPNHFDPLVKLPTRRRGPGRRPVVALAMKC 235


>SPAC821.05 |||translation initiation factor
           eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 357

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +3

Query: 312 YQTTPGCSTCHELFLWTTSSSWLCRHRILPSSSV 413
           YQ TP     HE   WT SS  L  H + PS+ +
Sbjct: 156 YQLTPEFMAAHEEKTWTASS--LNSHNLTPSNVI 187


>SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 613

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
 Frame = +2

Query: 185 FSLSSMSALLAREPRTFN--LSDTTAGVISLYCGTSLYSFSYVGLSNNT---WLFNLSRT 349
           F  S M+ +  +    FN  LSD    VIS   G + Y F  V LS+ T   W  N +  
Sbjct: 203 FYSSIMNEVAEKANAGFNISLSDYWGRVISRTLGDTTYGFPNVSLSSITSQEWYRNANFP 262

Query: 350 FPLDHF 367
           +P+  F
Sbjct: 263 YPIITF 268


>SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 150

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +2

Query: 260 VISLYCGTSLYSFSYV-GLSNNTWLFNLSRTFPLDHFFFLALPPP 391
           V+ + C  +L  F ++ G+ N         T P  +F+ L  PPP
Sbjct: 37  VVVIICIAALIFFFFIIGIINRRRTKKGQATIPFTNFYPLTAPPP 81


>SPBC16A3.12c |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 443

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +1

Query: 112 WIIALGRTCVXHLPMVLDYLFDETFFPKLDECSSRQGTS 228
           W  +L    +  +P  +DY+  ET   KL+     QGT+
Sbjct: 176 WNFSLDDMAMFDIPDTVDYILRETGREKLNYIGFSQGTA 214


>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 163 DYLFDETFFPKLDECSSR 216
           D LF E+F  +LD C  R
Sbjct: 684 DELFSESFLSRLDNCEKR 701


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,663,680
Number of Sequences: 5004
Number of extensions: 33802
Number of successful extensions: 147
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)