Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_K09
         (467 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27622| Best HMM Match : Ribosomal_S25 (HMM E-Value=0)              132   2e-31
SB_32247| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.48 
SB_59757| Best HMM Match : Gly_radical (HMM E-Value=3.5)               29   1.5  
SB_45659| Best HMM Match : E_Pc_C (HMM E-Value=1.2)                    27   5.9  
SB_27024| Best HMM Match : Pkinase (HMM E-Value=4.7e-25)               27   7.7  

>SB_27622| Best HMM Match : Ribosomal_S25 (HMM E-Value=0)
          Length = 115

 Score =  132 bits (318), Expect = 2e-31
 Identities = 67/115 (58%), Positives = 77/115 (66%)
 Frame = -3

Query: 459 PPKKDAKASAKQPQXXXXXXXXXXXXXXXXXXXXXXXXXXKLNNQVLFDKPTYEKLYKEV 280
           PPKKD K  AK+PQ                           LNN VLFDK TY+KLYKEV
Sbjct: 1   PPKKDPKKDAKKPQKAQKPAGSGGGKAKKKKWSKGKVRDK-LNNLVLFDKATYDKLYKEV 59

Query: 279 PQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVXYTRATKGDD 115
           P Y+LITP+VVSERLK+RGSLARRAL+EL+ KGLIK+V +HH Q+ YTRATKG D
Sbjct: 60  PSYRLITPSVVSERLKIRGSLARRALLELQSKGLIKEVSKHHSQLIYTRATKGAD 114


>SB_32247| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2209

 Score = 31.1 bits (67), Expect = 0.48
 Identities = 19/68 (27%), Positives = 30/68 (44%)
 Frame = +2

Query: 155  WCWTTCLMRPFSLSSMSALLAREPRTFNLSDTTAGVISLYCGTSLYSFSYVGLSNNTWLF 334
            WC     +RPF LSS++  L R      +  ++ GV     GT     S  G++   W  
Sbjct: 2144 WCGPVYFVRPFCLSSIAYRLIRA-----IMSSSLGVACSPVGTKAPGVSSGGITRTIWSA 2198

Query: 335  NLSRTFPL 358
            + +R  P+
Sbjct: 2199 SRTREMPV 2206


>SB_59757| Best HMM Match : Gly_radical (HMM E-Value=3.5)
          Length = 389

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 9/44 (20%)
 Frame = +1

Query: 94  YHSLCDWII---ALGRTCVXH------LPMVLDYLFDETFFPKL 198
           YH+ CDW+      G TC+ H         +L+YLF   F P++
Sbjct: 65  YHAFCDWLFDGSNAGYTCLAHNFKGYDYYFILEYLFTNGFKPEV 108


>SB_45659| Best HMM Match : E_Pc_C (HMM E-Value=1.2)
          Length = 1244

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 281 TSLYSFSYVGLSNNTWLFNLSRTFPLDH 364
           +SL+     G+SN+ WL N S T P++H
Sbjct: 250 SSLHIEKENGISNDDWLSNPSFTSPIEH 277


>SB_27024| Best HMM Match : Pkinase (HMM E-Value=4.7e-25)
          Length = 1595

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 22/57 (38%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
 Frame = +2

Query: 122 PLVARVXITCPWCWTTCLMRPFSL---SSMSALLAREPRTFNLSDTTAGVISLYCGT 283
           PLV R+ I CP C T    RP SL    SM     R  R FN +  T    +L   T
Sbjct: 179 PLVRRL-IPCPKCTTDIRKRPPSLRRSCSMEFPSQRLQRPFNFTLPTCAAAALMFST 234


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,863,321
Number of Sequences: 59808
Number of extensions: 277592
Number of successful extensions: 840
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 969807871
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)