Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_K06
         (374 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    24   0.44 
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    20   7.2  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    20   7.2  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    20   9.5  

>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 24.2 bits (50), Expect = 0.44
 Identities = 11/43 (25%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +1

Query: 139 KINSYLFKLILMN--INLFKLILMNINLNYRAKFVVKTYVYFI 261
           K++ +   +IL++  + +  +   N N+NY    +V+T  YF+
Sbjct: 5   KLHKHYVPIILLSKILGIAPISYKNSNVNYSKIGIVQTVAYFV 47


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
            protein.
          Length = 947

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
 Frame = +1

Query: 4    NATYNVNNSEPAKKKTVVPEDKFDSDESNAPATEGSTVD-YGLXXKKINSYLFKLILMNI 180
            N TY+ ++  P     VVP  +  +  +     EG   + Y      +N   +   ++++
Sbjct: 809  NGTYSADDEVPMLLHGVVPRKEIPAKSAEQILAEGGCPNLYDARKPYVNGSEYHPSIVSL 868

Query: 181  NLFKLI 198
              +K +
Sbjct: 869  GEYKCV 874


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 40  KKKTVVPEDKFDSDESNAPATEGS 111
           K   +VP+  F+ +   AP+TE S
Sbjct: 238 KPTPLVPQQGFNMERLLAPSTEVS 261


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +1

Query: 142 INSYLFKLILMNIN 183
           INSYLF L L   N
Sbjct: 43  INSYLFSLSLAQNN 56


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.316    0.132    0.364 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,525
Number of Sequences: 336
Number of extensions: 768
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7828090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.7 bits)