Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_K06
         (374 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar...    25   3.9  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    25   3.9  
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch...    25   5.1  
SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomy...    24   6.8  
SPAC18B11.09c |||N-acetyltransferase |Schizosaccharomyces pombe|...    24   9.0  

>SPBC530.14c |dsk1||SR protein-specific kinase
           Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 25  NSEPAKKKTVVPEDKFDSDESNAPATEGSTVDYGL-XXKKINSY 153
           NS+PA +  V+P   F S  S  P+ EG+  +  L   +K NS+
Sbjct: 286 NSKPAGQ--VIPSSPFTSTLSRFPSLEGAVSEISLRDSQKHNSH 327


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 25  NSEPAKKKTVVPEDKFDSD 81
           N +P K K ++P+ +FD D
Sbjct: 53  NKKPLKPKIIIPDKEFDLD 71


>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 632

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +1

Query: 148 SYLFKLILMNINLFKLILMNINLNYRAKFVVKTYVYFINKYSFSV 282
           S L  LI+   N+   IL+N+   Y  K+ +   +  + KY+  +
Sbjct: 379 SQLLNLIVSLSNITDAILLNVFAPYSTKYGIDLRLQNVGKYNLEL 423


>SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 4   NATYNVNNSEPAKKKTVVPEDKFDSDESNAPATEGSTVDYG 126
           N TY  ++ EP K    V E+K  +  +++ +   ST D+G
Sbjct: 268 NDTYIADDDEPKKDNQNVVEEKQINLTTSSDSHPTSTEDFG 308


>SPAC18B11.09c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 207

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 16  NVNNSEPAKKKTVVPEDKFDSDESNAPATE-GSTVDYG 126
           NV  +E  K++  +  + F  DES+AP  E     DYG
Sbjct: 55  NVGPAELIKRRAELLAEVFVFDESSAPEIEPPMAFDYG 92


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.132    0.364 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 868,732
Number of Sequences: 5004
Number of extensions: 11683
Number of successful extensions: 35
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)