Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_K06
         (374 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003142-3|AAB54188.1|  739|Caenorhabditis elegans Him-three par...    29   0.82 
Z46935-3|CAE48508.1|  794|Caenorhabditis elegans Hypothetical pr...    29   1.1  
AF047653-2|AAC04459.1|  388|Caenorhabditis elegans Hypothetical ...    29   1.1  
Z83128-7|CAB05634.2|  243|Caenorhabditis elegans Hypothetical pr...    27   4.4  
U23178-1|AAK68301.1| 1280|Caenorhabditis elegans Guanylyl cyclas...    26   7.6  
AL033514-27|CAA22088.1|  363|Caenorhabditis elegans Hypothetical...    26   7.6  

>AF003142-3|AAB54188.1|  739|Caenorhabditis elegans Him-three
           paralog protein 3 protein.
          Length = 739

 Score = 29.5 bits (63), Expect = 0.82
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 40  KKKTVVPEDKFDSDESNAPATEGSTVDYGLXXKKIN 147
           + K+ +PE+  D D + +   E ST  YG+    IN
Sbjct: 462 ESKSAIPEEAADLDNTTSEKQESSTARYGVSNTSIN 497


>Z46935-3|CAE48508.1|  794|Caenorhabditis elegans Hypothetical
           protein M106.4b protein.
          Length = 794

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = +1

Query: 4   NATYNVNNSEPAKKKTVVPEDKFDSDESNAPATEGSTVDYGLXXKKINS 150
           ++ ++ N + P KK    PED+FDS   NA  +  + V+  L  +K++S
Sbjct: 62  DSQHSTNKAPPPKK---APEDRFDSANMNASGSHVTLVE-NLPVEKVSS 106


>AF047653-2|AAC04459.1|  388|Caenorhabditis elegans Hypothetical
           protein W02F12.3 protein.
          Length = 388

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 1   SNATYNVNNSEPAKKKTVVPEDKFDSDESNAPATEG 108
           +N+ +    SEP  +    PED  D D+SN P+T G
Sbjct: 288 NNSDHGEGPSEPQNRPPSRPED--DDDDSNKPSTSG 321


>Z83128-7|CAB05634.2|  243|Caenorhabditis elegans Hypothetical
           protein W01D2.3 protein.
          Length = 243

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +1

Query: 148 SYLFKLILMNINLFKLILMNINLNYRAKFVVKTY 249
           S+L  LI  ++ LF+LI M++ L+ R   +  TY
Sbjct: 174 SFLSSLIHWDLRLFRLIFMSMCLSTRIPVLAATY 207


>U23178-1|AAK68301.1| 1280|Caenorhabditis elegans Guanylyl cyclase
           protein 12 protein.
          Length = 1280

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 136 KKINSYLFKLILMNINLFKLILMNINLNY 222
           K I SYL  ++++ I +F L+L    LNY
Sbjct: 592 KGIFSYLTVVVMILIAVFSLVLTGFTLNY 620


>AL033514-27|CAA22088.1|  363|Caenorhabditis elegans Hypothetical
           protein Y75B8A.28 protein.
          Length = 363

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 181 NLFKLILMNINLNYRAKFVVKTYVYFINKY 270
           N  K+    I+ NY AK +    VY +NKY
Sbjct: 332 NRVKMDFETIHYNYEAKVLEYVSVYCVNKY 361


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.316    0.132    0.364 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,781,584
Number of Sequences: 27780
Number of extensions: 63599
Number of successful extensions: 240
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 546325158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)