Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_K03
(613 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 115 3e-26
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 115 3e-26
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 100 2e-21
06_03_0392 + 20318728-20319309,20319596-20319725,20319844-203198... 31 0.72
07_03_1414 - 26403361-26403969 29 2.9
10_08_0723 + 20111974-20112705 28 6.7
07_03_1422 + 26462871-26463434,26463772-26463897 28 6.7
07_03_1413 - 26396426-26396890 28 6.7
02_04_0587 + 24110333-24110584,24111193-24111261,24112347-241128... 28 6.7
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 115 bits (277), Expect = 3e-26
Identities = 50/77 (64%), Positives = 61/77 (79%)
Frame = +1
Query: 193 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 372
NPLFEKRPK F IG + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLD
Sbjct: 22 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLD 81
Query: 373 KTTAKGLFKIXEKYRPE 423
K A LFK+ KYRPE
Sbjct: 82 KNLATNLFKMLLKYRPE 98
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 115 bits (277), Expect = 3e-26
Identities = 50/77 (64%), Positives = 61/77 (79%)
Frame = +1
Query: 193 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 372
NPLFEKRPK F IG + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLD
Sbjct: 6 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLD 65
Query: 373 KTTAKGLFKIXEKYRPE 423
K A LFK+ KYRPE
Sbjct: 66 KNLATNLFKMLLKYRPE 82
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 99.5 bits (237), Expect = 2e-21
Identities = 43/61 (70%), Positives = 51/61 (83%)
Frame = +1
Query: 193 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 372
NPLFEKRPK F IG + P +DL RFVRWPK +RIQRQ+ VL++RLKVPP +NQFT+TLD
Sbjct: 23 NPLFEKRPKQFGIGGALPPRKDLHRFVRWPKAVRIQRQRRVLKQRLKVPPALNQFTRTLD 82
Query: 373 K 375
K
Sbjct: 83 K 83
>06_03_0392 +
20318728-20319309,20319596-20319725,20319844-20319895,
20319995-20320061,20320547-20320633,20322526-20322567,
20322635-20322740,20323155-20323219,20323299-20323343,
20323442-20323549,20323636-20323723,20324147-20324193,
20324355-20324363
Length = 475
Score = 31.1 bits (67), Expect = 0.72
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 291 PHPAPEGCTSASSESAPSDQP 353
P PAPE +A+ E+APSD P
Sbjct: 53 PQPAPEEAPAAAEEAAPSDDP 73
>07_03_1414 - 26403361-26403969
Length = 202
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = -2
Query: 303 ALDADILGPSYKSGQVTSWLNALTNSKVLWPLLEERIHDLLGLNLFD 163
AL A + P + G++ + + +T + L P LEE + GL L+D
Sbjct: 76 ALSAAVSNPGFFFGRMVVFNDPVTEGRALPPSLEETVVRAQGLYLYD 122
>10_08_0723 + 20111974-20112705
Length = 243
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -3
Query: 164 TTNGAAATFFPTFXLGFXCTILNSY 90
TTN AAA FF +GF +L SY
Sbjct: 162 TTNAAAAPFFGGDSIGFVDVVLGSY 186
>07_03_1422 + 26462871-26463434,26463772-26463897
Length = 229
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -2
Query: 303 ALDADILGPSYKSGQVTSWLNALTNSKVLWPLLEERIHDLLGLNLFD 163
AL + P Y G+V + + +T + L P LEE GL L D
Sbjct: 74 ALSTAVSSPGYFFGRVVVFNDPMTEGRALPPSLEETAVRAQGLYLLD 120
>07_03_1413 - 26396426-26396890
Length = 154
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -2
Query: 303 ALDADILGPSYKSGQVTSWLNALTNSKVLWPLLEERIHDLLGLNLFD 163
AL + P Y G+V + + +T + L P LEE GL L D
Sbjct: 28 ALSTAVSSPGYFFGRVVVFNDPMTEGRALPPSLEETAVRAQGLYLLD 74
>02_04_0587 +
24110333-24110584,24111193-24111261,24112347-24112850,
24113094-24113336
Length = 355
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = -1
Query: 238 PDQ*QSSLASSRREDSRSSWAQPF*PPMGRR 146
P SSLA +RR +R AQP PP RR
Sbjct: 24 PSSAASSLAFARRAAARPLRAQPLLPPAARR 54
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,485,788
Number of Sequences: 37544
Number of extensions: 263215
Number of successful extensions: 782
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -