Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_K03
         (613 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X82782-1|CAA58023.1|  271|Drosophila melanogaster ribosomal prot...   149   2e-36
AY089570-1|AAL90308.1|  271|Drosophila melanogaster RE05022p pro...   149   2e-36
AE014298-903|AAF46169.1|  271|Drosophila melanogaster CG3314-PD,...   149   2e-36
AE014298-902|AAN09172.1|  271|Drosophila melanogaster CG3314-PC,...   149   2e-36
AE014298-901|AAN09170.1|  271|Drosophila melanogaster CG3314-PA,...   149   2e-36

>X82782-1|CAA58023.1|  271|Drosophila melanogaster ribosomal protein
           L7a protein.
          Length = 271

 Score =  149 bits (362), Expect = 2e-36
 Identities = 70/112 (62%), Positives = 81/112 (72%)
 Frame = +1

Query: 193 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 372
           N LFEKRPKNF IGQ +QP RDLSRFVRWPKYIR+QRQKAVLQ+RLKVPPPI+QF+QTLD
Sbjct: 34  NQLFEKRPKNFGIGQNVQPKRDLSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLD 93

Query: 373 KTTAKGLFKIXEKYRPETXXXXXXXXXXXXXXXXXXXDEPPPKRPNTIRSGT 528
           KTTA  LFK+ EKYRPE+                   D  P K+P+ + +GT
Sbjct: 94  KTTAVKLFKLLEKYRPESALAKNVRLKKIAEAKAKGKDVEPKKKPSYVSAGT 145



 Score = 28.7 bits (61), Expect = 6.5
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = +3

Query: 528 NTXTXXXXXXXXXXXXIAHDVDPIELVL 611
           NT T            IAHDVDP+ELVL
Sbjct: 146 NTVTKLIEQKKAQLVVIAHDVDPLELVL 173


>AY089570-1|AAL90308.1|  271|Drosophila melanogaster RE05022p
           protein.
          Length = 271

 Score =  149 bits (362), Expect = 2e-36
 Identities = 70/112 (62%), Positives = 81/112 (72%)
 Frame = +1

Query: 193 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 372
           N LFEKRPKNF IGQ +QP RDLSRFVRWPKYIR+QRQKAVLQ+RLKVPPPI+QF+QTLD
Sbjct: 34  NQLFEKRPKNFGIGQNVQPKRDLSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLD 93

Query: 373 KTTAKGLFKIXEKYRPETXXXXXXXXXXXXXXXXXXXDEPPPKRPNTIRSGT 528
           KTTA  LFK+ EKYRPE+                   D  P K+P+ + +GT
Sbjct: 94  KTTAVKLFKLLEKYRPESPLAKKLRLKKIAEAKAKGKDVEPKKKPSYVSAGT 145



 Score = 28.7 bits (61), Expect = 6.5
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = +3

Query: 528 NTXTXXXXXXXXXXXXIAHDVDPIELVL 611
           NT T            IAHDVDP+ELVL
Sbjct: 146 NTVTKLIEQKKAQLVVIAHDVDPLELVL 173


>AE014298-903|AAF46169.1|  271|Drosophila melanogaster CG3314-PD,
           isoform D protein.
          Length = 271

 Score =  149 bits (362), Expect = 2e-36
 Identities = 70/112 (62%), Positives = 81/112 (72%)
 Frame = +1

Query: 193 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 372
           N LFEKRPKNF IGQ +QP RDLSRFVRWPKYIR+QRQKAVLQ+RLKVPPPI+QF+QTLD
Sbjct: 34  NQLFEKRPKNFGIGQNVQPKRDLSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLD 93

Query: 373 KTTAKGLFKIXEKYRPETXXXXXXXXXXXXXXXXXXXDEPPPKRPNTIRSGT 528
           KTTA  LFK+ EKYRPE+                   D  P K+P+ + +GT
Sbjct: 94  KTTAVKLFKLLEKYRPESPLAKKLRLKKIAEAKAKGKDVEPKKKPSYVSAGT 145



 Score = 28.7 bits (61), Expect = 6.5
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = +3

Query: 528 NTXTXXXXXXXXXXXXIAHDVDPIELVL 611
           NT T            IAHDVDP+ELVL
Sbjct: 146 NTVTKLIEQKKAQLVVIAHDVDPLELVL 173


>AE014298-902|AAN09172.1|  271|Drosophila melanogaster CG3314-PC,
           isoform C protein.
          Length = 271

 Score =  149 bits (362), Expect = 2e-36
 Identities = 70/112 (62%), Positives = 81/112 (72%)
 Frame = +1

Query: 193 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 372
           N LFEKRPKNF IGQ +QP RDLSRFVRWPKYIR+QRQKAVLQ+RLKVPPPI+QF+QTLD
Sbjct: 34  NQLFEKRPKNFGIGQNVQPKRDLSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLD 93

Query: 373 KTTAKGLFKIXEKYRPETXXXXXXXXXXXXXXXXXXXDEPPPKRPNTIRSGT 528
           KTTA  LFK+ EKYRPE+                   D  P K+P+ + +GT
Sbjct: 94  KTTAVKLFKLLEKYRPESPLAKKLRLKKIAEAKAKGKDVEPKKKPSYVSAGT 145



 Score = 28.7 bits (61), Expect = 6.5
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = +3

Query: 528 NTXTXXXXXXXXXXXXIAHDVDPIELVL 611
           NT T            IAHDVDP+ELVL
Sbjct: 146 NTVTKLIEQKKAQLVVIAHDVDPLELVL 173


>AE014298-901|AAN09170.1|  271|Drosophila melanogaster CG3314-PA,
           isoform A protein.
          Length = 271

 Score =  149 bits (362), Expect = 2e-36
 Identities = 70/112 (62%), Positives = 81/112 (72%)
 Frame = +1

Query: 193 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 372
           N LFEKRPKNF IGQ +QP RDLSRFVRWPKYIR+QRQKAVLQ+RLKVPPPI+QF+QTLD
Sbjct: 34  NQLFEKRPKNFGIGQNVQPKRDLSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLD 93

Query: 373 KTTAKGLFKIXEKYRPETXXXXXXXXXXXXXXXXXXXDEPPPKRPNTIRSGT 528
           KTTA  LFK+ EKYRPE+                   D  P K+P+ + +GT
Sbjct: 94  KTTAVKLFKLLEKYRPESPLAKKLRLKKIAEAKAKGKDVEPKKKPSYVSAGT 145



 Score = 28.7 bits (61), Expect = 6.5
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = +3

Query: 528 NTXTXXXXXXXXXXXXIAHDVDPIELVL 611
           NT T            IAHDVDP+ELVL
Sbjct: 146 NTVTKLIEQKKAQLVVIAHDVDPLELVL 173


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,350,596
Number of Sequences: 53049
Number of extensions: 410049
Number of successful extensions: 1130
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1130
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2497240350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)