Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_K03
         (613 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal pro...   128   4e-30
AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal pro...   119   2e-27
AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical ...   118   2e-27
AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical ...   100   9e-22
AF016444-5|AAB65932.1|  330|Caenorhabditis elegans Serpentine re...    31   0.49 
U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z77133-2|CAB00864.2|  664|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform a protein.
          Length = 265

 Score =  128 bits (308), Expect = 4e-30
 Identities = 59/111 (53%), Positives = 73/111 (65%)
 Frame = +1

Query: 193 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 372
           NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF   LD
Sbjct: 30  NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 89

Query: 373 KTTAKGLFKIXEKYRPETXXXXXXXXXXXXXXXXXXXDEPPPKRPNTIRSG 525
             +A+  FK+ +KYRPE+                    E   KRPNT+R G
Sbjct: 90  SQSARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKKEEVTKRPNTVRHG 140


>AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform c protein.
          Length = 245

 Score =  119 bits (286), Expect = 2e-27
 Identities = 51/78 (65%), Positives = 64/78 (82%)
 Frame = +1

Query: 193 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 372
           NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF   LD
Sbjct: 30  NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 89

Query: 373 KTTAKGLFKIXEKYRPET 426
             +A+  FK+ +KYRPE+
Sbjct: 90  SQSARQAFKLLDKYRPES 107


>AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18a protein.
          Length = 234

 Score =  118 bits (285), Expect = 2e-27
 Identities = 51/78 (65%), Positives = 64/78 (82%)
 Frame = +1

Query: 193 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 372
           NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF   LD
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192

Query: 373 KTTAKGLFKIXEKYRPET 426
             +A+  FK+ +KYRPE+
Sbjct: 193 SHSARQAFKLLDKYRPES 210


>AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18b protein.
          Length = 199

 Score =  100 bits (239), Expect = 9e-22
 Identities = 43/60 (71%), Positives = 51/60 (85%)
 Frame = +1

Query: 193 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 372
           NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF   LD
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192


>AF016444-5|AAB65932.1|  330|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 6 protein.
          Length = 330

 Score = 31.5 bits (68), Expect = 0.49
 Identities = 12/35 (34%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
 Frame = -2

Query: 450 QPLFXGCFSLRPVFLXNLEKA-LSCSLVQCLGKLV 349
           QP+   C +++P F+ N+EKA + C ++Q  G+++
Sbjct: 171 QPVMNYCTAVKPGFVTNIEKAFIGCLIIQIGGRII 205


>U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical
           protein F07F6.4 protein.
          Length = 529

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = +2

Query: 341 LRSTNLPRHWTRLQLRA 391
           +RSTNL  +WT LQLRA
Sbjct: 65  VRSTNLDTNWTWLQLRA 81


>Z77133-2|CAB00864.2|  664|Caenorhabditis elegans Hypothetical
           protein K03A11.4 protein.
          Length = 664

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 14/59 (23%), Positives = 29/59 (49%)
 Frame = +1

Query: 244 QPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKIXEKYRP 420
           +PT D+S  +++  ++ +    +  Q R  +P  ++ FT  +D      + K+ E  RP
Sbjct: 188 KPTIDISSLMQFDVFVILLDSLSYSQGRRALPRTLSYFTNHMDGVIFPYVNKVGENSRP 246


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,490,109
Number of Sequences: 27780
Number of extensions: 198090
Number of successful extensions: 581
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)