Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_K01
         (657 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4V9I4 Cluster: Wu:fb02f03 protein; n=8; Eumetazoa|Rep:...    36   0.65 
UniRef50_P41250 Cluster: Glycyl-tRNA synthetase; n=54; Bilateria...    35   1.5  

>UniRef50_Q4V9I4 Cluster: Wu:fb02f03 protein; n=8; Eumetazoa|Rep:
           Wu:fb02f03 protein - Danio rerio (Zebrafish)
           (Brachydanio rerio)
          Length = 764

 Score = 36.3 bits (80), Expect = 0.65
 Identities = 18/25 (72%), Positives = 19/25 (76%)
 Frame = +3

Query: 549 DPXIEEILAPLRANVKXQGDLVXKL 623
           D  IEEILAPLR  VK QGDLV +L
Sbjct: 82  DGSIEEILAPLRLAVKEQGDLVRQL 106


>UniRef50_P41250 Cluster: Glycyl-tRNA synthetase; n=54;
           Bilateria|Rep: Glycyl-tRNA synthetase - Homo sapiens
           (Human)
          Length = 739

 Score = 35.1 bits (77), Expect = 1.5
 Identities = 16/26 (61%), Positives = 19/26 (73%)
 Frame = +3

Query: 561 EEILAPLRANVKXQGDLVXKLNRXKS 638
           EE+LAPLR  V+ QGDLV KL   K+
Sbjct: 61  EEVLAPLRLAVRQQGDLVRKLKEDKA 86


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 500,558,271
Number of Sequences: 1657284
Number of extensions: 7947855
Number of successful extensions: 19038
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 18607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19037
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49586781480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)