Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_K01
         (657 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    28   1.4  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    27   2.4  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    26   5.5  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    25   9.6  

>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
 Frame = +3

Query: 414 SVVYLVNKSQSSVIIYVFH-----TVSSGAAISFIERLKYR--ILFREIIMADPXIEEIL 572
           S V L    Q+S++I++       T+S G  + ++E + Y+  I++ E ++ D    + +
Sbjct: 598 SRVPLSEDPQNSIVIFIDENSEASTISKGVVLKYLETISYKVSIIYLEKLLLDNKFNDTV 657

Query: 573 APLR 584
            P R
Sbjct: 658 FPTR 661


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -3

Query: 625 LSFXTKSPCXFTLALKGARISSXLG-SAIMISRK 527
           L F T SPC FT+    AR+ S  G S + + R+
Sbjct: 56  LPFLTLSPCSFTICSLRARLHSLHGPSTVFLKRE 89


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 9/23 (39%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = +2

Query: 17  YGL-YSFCLSTGENVNSCHCNPW 82
           +GL +SFCL+ G   ++ H + W
Sbjct: 864 FGLWFSFCLNCGHGAHASHASEW 886


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +2

Query: 398 LSLVYKCSVFSKQVTVFSNH-LRLSHSQQWGSNKLHRKIKIPNPFSRN 538
           LS +YK ++   ++ V   H   LS    W  +KL + +KI  PF R+
Sbjct: 720 LSEIYK-AIKENEIIVAEEHDTELSFLYIW--SKLQQSVKITEPFKRS 764


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,187,718
Number of Sequences: 5004
Number of extensions: 37228
Number of successful extensions: 87
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)