Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_K01
         (657 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23412-2|AAN65294.1|  678|Caenorhabditis elegans Glycyl trna syn...    33   0.13 
U23412-1|AAK21465.2|  742|Caenorhabditis elegans Glycyl trna syn...    33   0.13 
AF099919-6|AAC68803.1|  261|Caenorhabditis elegans Hypothetical ...    29   3.8  
AF100656-7|AAF99964.2|  615|Caenorhabditis elegans Hypothetical ...    28   6.7  

>U23412-2|AAN65294.1|  678|Caenorhabditis elegans Glycyl trna
           synthetase protein1, isoform b protein.
          Length = 678

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 17/27 (62%), Positives = 18/27 (66%)
 Frame = +3

Query: 543 MADPXIEEILAPLRANVKXQGDLVXKL 623
           MA P IE  LAPLRA VK  GDL+  L
Sbjct: 1   MATPEIEAKLAPLRAAVKEYGDLIRDL 27


>U23412-1|AAK21465.2|  742|Caenorhabditis elegans Glycyl trna
           synthetase protein1, isoform a protein.
          Length = 742

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 17/27 (62%), Positives = 18/27 (66%)
 Frame = +3

Query: 543 MADPXIEEILAPLRANVKXQGDLVXKL 623
           MA P IE  LAPLRA VK  GDL+  L
Sbjct: 65  MATPEIEAKLAPLRAAVKEYGDLIRDL 91


>AF099919-6|AAC68803.1|  261|Caenorhabditis elegans Hypothetical
           protein F40G9.14 protein.
          Length = 261

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -2

Query: 194 INTSTSSEKEKDDEIRKCQMLAKNSIDEYKICLFDFD 84
           IN ++  EKE+ ++I+K   L +   DE KIC   ++
Sbjct: 110 INGASEEEKERKEQIKKRYQLDEYVDDECKICFEKYE 146


>AF100656-7|AAF99964.2|  615|Caenorhabditis elegans Hypothetical
           protein F49F1.8 protein.
          Length = 615

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = -2

Query: 200 ININTSTSSEKEKDDEIRKCQMLAKNSIDEY 108
           +  +T   +E +K++E+RKC+     S+D++
Sbjct: 160 LGASTEVLTENKKENELRKCKQKDGESVDDF 190


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,812,751
Number of Sequences: 27780
Number of extensions: 201398
Number of successful extensions: 514
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)