Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_J23
(653 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 54 2e-08
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 46 4e-06
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 46 5e-06
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 45 8e-06
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 45 8e-06
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 44 1e-05
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 44 3e-05
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 43 4e-05
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 42 8e-05
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 42 1e-04
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 42 1e-04
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 41 1e-04
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 40 2e-04
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 40 3e-04
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 39 5e-04
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 38 0.002
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 37 0.003
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 37 0.003
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 36 0.005
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 35 0.009
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 35 0.009
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 35 0.009
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 34 0.016
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 34 0.021
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 33 0.027
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 33 0.027
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 33 0.036
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 32 0.083
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 31 0.11
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 31 0.11
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 31 0.11
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 31 0.19
SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom... 30 0.25
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 30 0.34
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 29 0.44
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2... 26 4.1
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 26 5.5
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c... 26 5.5
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 25 9.5
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 25 9.5
SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|ch... 25 9.5
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 54.0 bits (124), Expect = 2e-08
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Frame = +3
Query: 432 KVNWATSPGNQPKT-DTSNHHHIFVGDLSPEIETNILREAFAP-FGEISNCRIVRDPQTL 605
K+NWA+ G + K+ ++ + IFVGDLSP + + FA + + +I+ DPQT
Sbjct: 166 KLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTN 225
Query: 606 KSKGYAFVSFVKKAD 650
S+GY FV F + D
Sbjct: 226 VSRGYGFVRFTDEND 240
Score = 33.5 bits (73), Expect = 0.027
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Frame = +2
Query: 227 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIRE--PG-NDPYAFLEF 361
TL++G L+P VTE F+ ++ +G K+IR G N Y F+EF
Sbjct: 94 TLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEF 141
Score = 31.1 bits (67), Expect = 0.15
Identities = 12/53 (22%), Positives = 28/53 (52%)
Frame = +3
Query: 495 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADA 653
+++G+L P + +++ + G+ +++R+ T + GY FV F +A
Sbjct: 95 LWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEA 147
Score = 29.5 bits (63), Expect = 0.44
Identities = 22/60 (36%), Positives = 28/60 (46%)
Frame = +3
Query: 474 DTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADA 653
DT+N +FVG LS + L+ F FGEI +I KG FV FV + A
Sbjct: 299 DTANST-VFVGGLSKFVSEEELKYLFQNFGEIVYVKIP------PGKGCGFVQFVNRQSA 351
Score = 29.1 bits (62), Expect = 0.59
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Frame = +2
Query: 227 TLYVGNLDPSVTEVFLCTLF-GQIGDVKGCKIIREPGND---PYAFLEFT 364
+++VG+L P+V E + +LF + K KI+ +P + Y F+ FT
Sbjct: 187 SIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFT 236
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 46.4 bits (105), Expect = 4e-06
Identities = 28/79 (35%), Positives = 43/79 (54%)
Frame = +3
Query: 399 MNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNC 578
+N + +D+ ++V+ + P Q DT +FVG+L+ E E L F G I
Sbjct: 245 LNGTMFMDRHLRVDSVSHPMPQ---DTKRC--VFVGNLAFEAEEEPLWRYFGDCGSIDYV 299
Query: 579 RIVRDPQTLKSKGYAFVSF 635
RIVRDP+T KG+A++ F
Sbjct: 300 RIVRDPKTNLGKGFAYIQF 318
Score = 27.1 bits (57), Expect = 2.4
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = +2
Query: 224 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGND---PYAFLEF 361
+ ++VGNL E L FG G + +I+R+P + +A+++F
Sbjct: 270 RCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQF 318
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 46.0 bits (104), Expect = 5e-06
Identities = 25/87 (28%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Frame = +3
Query: 399 MNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNC 578
+N ++ + ++ W+ + K T N +F+ +L P I+ L + F+ FG+I +C
Sbjct: 141 LNYTLIKGRPCRIMWSQRDPSLRKMGTGN---VFIKNLDPAIDNKALHDTFSAFGKILSC 197
Query: 579 RIVRDPQTLKSKGYAFVSF--VKKADA 653
++ D + +KGY FV F V+ A+A
Sbjct: 198 KVAVD-ELGNAKGYGFVHFDSVESANA 223
Score = 44.0 bits (99), Expect = 2e-05
Identities = 19/52 (36%), Positives = 31/52 (59%)
Frame = +3
Query: 495 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAD 650
++VG+L P + +L E F G +++ R+ RD T +S GYA+V+F D
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMED 133
Score = 40.3 bits (90), Expect = 2e-04
Identities = 18/34 (52%), Positives = 22/34 (64%)
Frame = +2
Query: 227 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIRE 328
+LYVG LDPSVTE L LF IG V ++ R+
Sbjct: 81 SLYVGELDPSVTEAMLFELFNSIGPVASIRVCRD 114
Score = 36.3 bits (80), Expect = 0.004
Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Frame = +3
Query: 399 MNKRVVLDKEMKVNWATSPGN-QPKTDT--SNHHHIFVGDLSPEIETNILREAFAPFGEI 569
+N ++ DK++ V S Q K + +N ++++ +L EI + F FGEI
Sbjct: 228 VNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEI 287
Query: 570 SNCRIVRDPQTLKSKGYAFVSF 635
++ +V+D Q K +G+ FV++
Sbjct: 288 TSLSLVKD-QNDKPRGFGFVNY 308
Score = 36.3 bits (80), Expect = 0.004
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +2
Query: 230 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP--YAFLEFTCH 370
+Y+ NLD +TE LFGQ G++ ++++ + P + F+ + H
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANH 311
Score = 29.9 bits (64), Expect = 0.34
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +2
Query: 230 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKI-IREPGN-DPYAFLEF 361
+++ NLDP++ L F G + CK+ + E GN Y F+ F
Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHF 215
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 45.2 bits (102), Expect = 8e-06
Identities = 18/61 (29%), Positives = 39/61 (63%)
Frame = +3
Query: 453 PGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVS 632
P + P+ + + +FV ++ ++ + L++ F+ FG +++ RI+R+P T S+G+ F+S
Sbjct: 89 PQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLS 148
Query: 633 F 635
F
Sbjct: 149 F 149
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 45.2 bits (102), Expect = 8e-06
Identities = 18/47 (38%), Positives = 32/47 (68%)
Frame = +3
Query: 495 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 635
+F+G L+ E + LR+ F FGE+ +C ++RD T +S+G+ F++F
Sbjct: 165 MFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTF 211
Score = 31.1 bits (67), Expect = 0.15
Identities = 13/57 (22%), Positives = 27/57 (47%)
Frame = +3
Query: 465 PKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 635
P+ + +FVG + + R F FG + + ++ D T + +G+ FV++
Sbjct: 239 PREEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTY 295
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +2
Query: 230 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIRE 328
+++G L+ T+ L F Q G+V C ++R+
Sbjct: 165 MFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRD 197
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 44.4 bits (100), Expect = 1e-05
Identities = 20/58 (34%), Positives = 33/58 (56%)
Frame = +3
Query: 462 QPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 635
+P D++ +FVG LS ++ L + F +G I R++ D Q+ +SKGY +V F
Sbjct: 254 KPSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDF 311
Score = 38.7 bits (86), Expect = 7e-04
Identities = 18/47 (38%), Positives = 29/47 (61%)
Frame = +3
Query: 495 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 635
+FVG+LS + L AF G+I + R+ DPQ+ + KG+ +V+F
Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTF 414
Score = 36.3 bits (80), Expect = 0.004
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Frame = +2
Query: 191 R*ANMGDE-SHPK-TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP 331
R N GD+ S P T++VGNL + TE L T FG GD++ ++ +P
Sbjct: 353 RAGNFGDQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDP 401
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 43.6 bits (98), Expect = 3e-05
Identities = 26/64 (40%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +3
Query: 450 SPGNQPKTDTSNHHHIFVGDLSPEI--ETNILREAFAPFGEISNCRIVRDPQTLKSKGYA 623
+P + P D N +FV +L I T L E F+ FG I +C + P T SKGY
Sbjct: 409 TPTSTPTIDPCN---LFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYG 465
Query: 624 FVSF 635
FVSF
Sbjct: 466 FVSF 469
Score = 30.3 bits (65), Expect = 0.25
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Frame = +3
Query: 495 IFVGDLSPEIETNILREAFAPFGEISNCRIV--RDPQTLKSKG---YAFVSFVKKADA 653
I+VG+L +++ L E F PFG S ++ + ++ SK +AF++F K A
Sbjct: 22 IYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCSA 79
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 42.7 bits (96), Expect = 4e-05
Identities = 19/54 (35%), Positives = 35/54 (64%)
Frame = +3
Query: 474 DTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 635
D S+ +I++G+L ++ + + F+ FGE + +VRD +T KSKG+AF+ +
Sbjct: 26 DYSDSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKY 79
Score = 28.3 bits (60), Expect = 1.0
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = +2
Query: 209 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIR--EPGNDP-YAFLEF 361
D S +Y+GNLD + E + +F + G+ ++R E G +AFL++
Sbjct: 26 DYSDSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKY 79
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 41.9 bits (94), Expect = 8e-05
Identities = 18/51 (35%), Positives = 32/51 (62%)
Frame = +3
Query: 483 NHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 635
NH +FVG+L ++ L +AF+ + + ++VRD + K++G+ FVSF
Sbjct: 28 NHFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREG-KTRGFGFVSF 77
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 41.5 bits (93), Expect = 1e-04
Identities = 25/56 (44%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Frame = +2
Query: 200 NMGDESHP-KTLYVGNLDPSVTEVFLCTLFG-QIGDVKGCKIIREPGNDPYAFLEF 361
N D++ P T+YVGNL PS +E L LF Q+G + C R GN P F+EF
Sbjct: 417 NPADQNPPCNTIYVGNLPPSTSEEELKVLFSTQVGYKRLC--FRTKGNGPMCFVEF 470
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 41.5 bits (93), Expect = 1e-04
Identities = 20/53 (37%), Positives = 32/53 (60%)
Frame = +3
Query: 495 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADA 653
+ VG+L+P + ++L AF PFGEI + + R + + + YAFV F + DA
Sbjct: 8 VHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAV-DRSYAFVEFDEPEDA 59
Score = 34.7 bits (76), Expect = 0.012
Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +2
Query: 212 ESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIR-EPGND-PYAFLEF 361
E T++VGNL PSVTE L F G++ + R E D YAF+EF
Sbjct: 2 ERRKATVHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEF 53
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 41.1 bits (92), Expect = 1e-04
Identities = 19/50 (38%), Positives = 30/50 (60%)
Frame = +3
Query: 495 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKK 644
+FV L+P + L F+ FG+I +C+++RD +T S YAF+ F K
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNK 295
Score = 30.3 bits (65), Expect = 0.25
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Frame = +2
Query: 230 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIR--EPGND-PYAFLEF 361
L+V L+P + L +F + G + C++IR E G+ YAF+EF
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEF 292
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 40.3 bits (90), Expect = 2e-04
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +2
Query: 221 PKTLYVGNLDP-SVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEF 361
P +++VG LDP + T L LF + G V CKII + +AFL F
Sbjct: 364 PYSIFVGQLDPVNCTHYLLVDLFSKYGKVIDCKIIHQSKKPAFAFLRF 411
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 39.9 bits (89), Expect = 3e-04
Identities = 22/79 (27%), Positives = 42/79 (53%)
Frame = +3
Query: 399 MNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNC 578
+N+ + K ++VN A+ +T ++FVG+L P ++ +L + F+ G++
Sbjct: 72 LNQVKLFGKPIRVNRASQDRG---VNTLIGANLFVGNLDPLVDERVLYDTFSALGQLVKA 128
Query: 579 RIVRDPQTLKSKGYAFVSF 635
V + +SKGY FVS+
Sbjct: 129 PQVARDENGRSKGYGFVSY 147
Score = 31.5 bits (68), Expect = 0.11
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = +2
Query: 209 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIRE---PGNDPYAFLEF 361
D + T+Y+GNLD VT+ L L Q G V I R+ ++ + F EF
Sbjct: 6 DRNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEF 59
Score = 28.7 bits (61), Expect = 0.77
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = +2
Query: 230 LYVGNLDPSVTEVFLCTLFGQIGD-VKGCKIIREPG--NDPYAFLEF 361
L+VGNLDP V E L F +G VK ++ R+ + Y F+ +
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSY 147
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 39.1 bits (87), Expect = 5e-04
Identities = 19/52 (36%), Positives = 30/52 (57%)
Frame = +3
Query: 495 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAD 650
+F+ LS + + + + F +G I R+VR+ T KS GYAFV F ++ D
Sbjct: 102 MFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERD 153
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 37.5 bits (83), Expect = 0.002
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +3
Query: 495 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 635
+FVG++ ++ + E F G + ++V DP+T KGY F F
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEF 55
Score = 32.7 bits (71), Expect = 0.048
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Frame = +2
Query: 230 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP---GNDPYAFLEF 361
++VGN+ V+E + +F Q+G VK K++ +P Y F EF
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEF 55
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 36.7 bits (81), Expect = 0.003
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +3
Query: 495 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFV 638
+FVG+L + L+ F G++ + RI D + + KGYAFV F+
Sbjct: 94 LFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEFI 141
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 36.7 bits (81), Expect = 0.003
Identities = 17/45 (37%), Positives = 27/45 (60%)
Frame = +3
Query: 501 VGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 635
V +LS + LR+ F FG I + +D +T ++KG+AFVS+
Sbjct: 206 VTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSY 250
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 35.9 bits (79), Expect = 0.005
Identities = 17/53 (32%), Positives = 32/53 (60%)
Frame = +3
Query: 495 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADA 653
+FV +L+ + + + L F+ G I + +V +P+T +++GY FV+F DA
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDA 59
Score = 33.1 bits (72), Expect = 0.036
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +3
Query: 495 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAD 650
+FV +L E L F FG ++ ++V+DP T +S G F+ F + D
Sbjct: 279 VFVRNLLFECTEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKFRYEKD 330
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 35.1 bits (77), Expect = 0.009
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = +3
Query: 495 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 635
+FVG+L E L+E F G+I R++ T K KG+ FV F
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDF 276
Score = 29.5 bits (63), Expect = 0.44
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +2
Query: 230 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKII 322
L+VGNLD T+ L FGQ+G ++ +++
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLM 260
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 35.1 bits (77), Expect = 0.009
Identities = 21/66 (31%), Positives = 32/66 (48%)
Frame = +3
Query: 456 GNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 635
GN K T ++VG+LS ++ L+E G + NC I+ P L SKG A + +
Sbjct: 56 GNGQKY-TQQERRVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGL-SKGCAIIEY 113
Query: 636 VKKADA 653
+A
Sbjct: 114 STAEEA 119
Score = 30.3 bits (65), Expect = 0.25
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 224 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP 331
+ +YVGNL V L GQ+G+V C+I+ P
Sbjct: 66 RRVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLP 101
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 230 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP 331
+YVGNL + ++ L LF IG V +I EP
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP 315
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 35.1 bits (77), Expect = 0.009
Identities = 17/51 (33%), Positives = 29/51 (56%)
Frame = +3
Query: 495 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKA 647
+FV ++SP + + LR F FGE+ + + +P T S G +SF K++
Sbjct: 96 VFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISFDKRS 146
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 34.3 bits (75), Expect = 0.016
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = +3
Query: 480 SNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADA 653
S +F+ +L+ + L+ F PFG++ + D +T KG+A++ F DA
Sbjct: 320 SETKRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDA 377
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 33.9 bits (74), Expect = 0.021
Identities = 19/61 (31%), Positives = 31/61 (50%)
Frame = +3
Query: 471 TDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAD 650
++T+ ++F+G+L + EAF FG+I + +I L K AFV F+ D
Sbjct: 293 SNTAASRNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKI------LSKKNIAFVHFLNIRD 346
Query: 651 A 653
A
Sbjct: 347 A 347
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 33.5 bits (73), Expect = 0.027
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Frame = +3
Query: 435 VNWATSPGNQPKTDTS--NHHHIFVGDLSPEIET--NILREAFAPFGEISNCRIVRDPQT 602
V+W + + P S + +++V +L + T + L + F+PFG I + + P +
Sbjct: 362 VHWDSLRESSPSIPNSPIDPSNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNS 421
Query: 603 LKSKGYAFVSF 635
SKGY FV+F
Sbjct: 422 GISKGYGFVAF 432
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +2
Query: 212 ESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVK 307
E T+YVGN+D +++ + F + G V+
Sbjct: 13 EDESSTIYVGNIDSRLSDEEIIKHFSKYGQVE 44
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 33.5 bits (73), Expect = 0.027
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +3
Query: 495 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 635
+FV L+ + + L + F G + + +IVRD + +SKG A+V F
Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEF 288
Score = 31.1 bits (67), Expect = 0.15
Identities = 13/49 (26%), Positives = 26/49 (53%)
Frame = +3
Query: 489 HHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 635
H + V ++ + ++ F PFG+I + RD Q +SKG+ ++ +
Sbjct: 340 HRLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQN-RSKGFGYIQY 387
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 33.1 bits (72), Expect = 0.036
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +3
Query: 495 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKS-KGYAFVSF 635
I+VG LS IE++ L F+ FG +SN I+ + + + +A+++F
Sbjct: 7 IYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNF 54
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 31.9 bits (69), Expect = 0.083
Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Frame = +3
Query: 411 VVLDKEMKVNWATSPGNQPKTDT-----SNHHHIFVGDLSPEIETNILREAFAPFGEISN 575
V+ ++ +K+ W G P +I++G+ + L+E F FGEI
Sbjct: 383 VIRNRRLKIGWGKHSGPLPSNIALAVAGGASRNIYIGNADDSLTIERLKEDFEEFGEIEY 442
Query: 576 CRIVRDPQTLKSKGYAFVSFVKKADA 653
R+ K AFV+F A A
Sbjct: 443 VNFFRE------KNCAFVNFTSLASA 462
Score = 29.9 bits (64), Expect = 0.34
Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
Frame = +3
Query: 399 MNKRVVLDKEMKVNWATSPGNQPKT-----DTSNHHHIFVGDLSPEIETNILREAFAPFG 563
+ + + E+KV W + + + ++F+G+L I + +RE PFG
Sbjct: 171 LKRLTIRGTEVKVGWGKNSASNSSVLLAVQQSGACRNVFLGNLPNGITEDEIREDLEPFG 230
Query: 564 EISNCRIVRDPQTLKSKGYAFVSFVKKADA 653
I +IV + + AFV F+ A A
Sbjct: 231 PIDQIKIVTE------RNIAFVHFLNIAAA 254
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Frame = +2
Query: 224 KTLYVGNLDPS--VTEVFLCTLFGQI 295
KT+YVGNL P+ + E+ C G I
Sbjct: 115 KTVYVGNLPPNTPIDEILSCVRTGPI 140
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 31.5 bits (68), Expect = 0.11
Identities = 14/53 (26%), Positives = 29/53 (54%)
Frame = +3
Query: 495 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADA 653
++VG++ E+ + + F G + + ++V DP++ + KGY F + A A
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATA 59
Score = 27.5 bits (58), Expect = 1.8
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = +2
Query: 230 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP-GNDP--YAFLEF 361
+YVGN+ + E + +F Q G VK +++ +P P Y F E+
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEY 53
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 31.5 bits (68), Expect = 0.11
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = +3
Query: 477 TSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADA 653
TS ++++ L P L FG++S+ + + D +T KGY F F ++ A
Sbjct: 292 TSRTRNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACFEEEKSA 350
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 31.5 bits (68), Expect = 0.11
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = -3
Query: 426 PCRGPLACSWRPALWPPPV*HVNSRNAYGSFPGSRIILQPFTS-PI*PN 283
P PL S +P L PPPV V S S P + QP + P+ PN
Sbjct: 140 PLHNPLPVSCQPVLRPPPVPQVPSHWYPVSLPSPNLPHQPISKPPVIPN 188
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 30.7 bits (66), Expect = 0.19
Identities = 13/53 (24%), Positives = 29/53 (54%)
Frame = +3
Query: 495 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADA 653
I++ +L + + + E PFG++ + +++++ SKG+ F F +DA
Sbjct: 312 IYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDA 364
>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 30.3 bits (65), Expect = 0.25
Identities = 18/58 (31%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Frame = +3
Query: 486 HHHIFVGDLSP--EIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADA 653
++ ++VG ++P +IE + R FA +G+I R+ L S+G AF++++ +A+A
Sbjct: 173 NYTLYVGGITPTDDIEEIVSRH-FAEWGDIERIRV------LNSRGIAFITYLNEANA 223
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 29.9 bits (64), Expect = 0.34
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +3
Query: 495 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 635
++VG++ + L+ FA G ++ I+ D T KG+A++ F
Sbjct: 57 VYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEF 103
Score = 26.6 bits (56), Expect = 3.1
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Frame = +2
Query: 224 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGNDP-YAFLEFT 364
+++YVGN+D SVT L + F G V I+ + G+ +A++EF+
Sbjct: 55 QSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFS 104
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 29.5 bits (63), Expect = 0.44
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = +3
Query: 495 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADA 653
+FVG L+ + L+ F PFG I N +I KG FV + +K+ A
Sbjct: 299 VFVGGLASNLSEKDLQVCFQPFGRILNIKIP------FGKGCGFVQYSEKSAA 345
>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
Mei2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 750
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +2
Query: 230 LYVGNLDPSVTEVFLCTLFGQIGDVKG 310
L+V NL V L LF ++GDVKG
Sbjct: 197 LFVTNLPRIVPYATLLELFSKLGDVKG 223
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 25.8 bits (54), Expect = 5.5
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = +3
Query: 495 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADA 653
+F+ +LS +I + + F +G + R +R T++++G AFV + DA
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPV---RQIRLGNTVQTRGTAFVVYENVQDA 63
>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 547
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +2
Query: 560 W*D-IELSHSTRSSNAQIQGLCFCIICKES 646
W D + L T +S ++I G FC +C+E+
Sbjct: 483 WKDMLILKDQTDTSESRITGFYFCCLCREN 512
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 25.0 bits (52), Expect = 9.5
Identities = 8/31 (25%), Positives = 19/31 (61%)
Frame = +3
Query: 495 IFVGDLSPEIETNILREAFAPFGEISNCRIV 587
+FVG + P+ + + F +G+I +C+++
Sbjct: 6 LFVGRIPPQATREDMMDFFKGYGQILDCKLM 36
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 25.0 bits (52), Expect = 9.5
Identities = 17/58 (29%), Positives = 25/58 (43%)
Frame = +3
Query: 420 DKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRD 593
DK M+ + A + QP D HI+ + + N RE F + + R VRD
Sbjct: 878 DKIMEADKARANFTQPGGDHLTLLHIWNEWVDTDFSYNWARENFLQYKSLCRARDVRD 935
>SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 204
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Frame = -3
Query: 219 WL--SSPILAYR-NLSITFLTSMNTNIN 145
WL ++ ILAYR NL FLT + N+N
Sbjct: 134 WLLKNASILAYRRNLKYIFLTVFSANLN 161
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,663,838
Number of Sequences: 5004
Number of extensions: 54805
Number of successful extensions: 197
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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