Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_J23
(653 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 116 1e-26
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 116 1e-26
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 104 6e-23
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 100 1e-21
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 94 9e-20
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 85 5e-17
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 53 2e-07
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 53 2e-07
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 53 2e-07
AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily a... 53 2e-07
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 52 3e-07
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 52 3e-07
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 52 3e-07
EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA... 52 3e-07
EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA... 52 3e-07
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 52 3e-07
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 52 4e-07
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 52 4e-07
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 52 4e-07
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 52 4e-07
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 52 4e-07
U28944-8|AAK68193.1| 103|Caenorhabditis elegans Hypothetical pr... 50 2e-06
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 47 1e-05
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 47 1e-05
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 47 1e-05
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 47 1e-05
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 44 7e-05
AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical ... 44 7e-05
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 44 9e-05
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 44 9e-05
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 44 1e-04
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 44 1e-04
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 44 1e-04
EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA... 43 2e-04
U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna bi... 43 2e-04
AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor pr... 43 2e-04
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 42 3e-04
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 42 4e-04
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 42 5e-04
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 42 5e-04
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 42 5e-04
Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical pr... 41 7e-04
U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein (spl... 41 7e-04
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 41 7e-04
Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical pr... 40 0.001
Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical pr... 40 0.001
Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical pr... 40 0.001
Z69384-5|CAA93419.2| 408|Caenorhabditis elegans Hypothetical pr... 40 0.002
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 39 0.003
Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical pr... 39 0.003
AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical... 39 0.003
AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical ... 39 0.003
AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical ... 39 0.003
AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical ... 39 0.003
Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical pr... 39 0.004
U23172-14|AAL02495.1| 165|Caenorhabditis elegans Hypothetical p... 39 0.004
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 38 0.005
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 38 0.005
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 38 0.005
U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical p... 38 0.006
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 38 0.006
Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical pr... 36 0.019
AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative RNA-... 36 0.019
Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical pr... 36 0.025
AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical... 35 0.044
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 35 0.044
Z78019-5|CAB01455.1| 305|Caenorhabditis elegans Hypothetical pr... 35 0.058
U21302-2|AAA92287.1| 305|Caenorhabditis elegans RNP-1 protein. 35 0.058
Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical pr... 34 0.10
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 33 0.23
Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical p... 32 0.41
U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna b... 31 0.54
Z35663-4|CAA84724.1| 307|Caenorhabditis elegans Hypothetical pr... 31 0.94
U39997-3|AAK68389.1| 498|Caenorhabditis elegans Human daz (dele... 30 1.2
AB025253-1|BAA88577.1| 499|Caenorhabditis elegans DAZ-1 protein. 30 1.2
U55370-7|AAA97998.2| 388|Caenorhabditis elegans Hypothetical pr... 29 2.2
AC006605-3|AAK85442.1| 933|Caenorhabditis elegans Hypothetical ... 29 2.2
Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical pr... 29 3.8
U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical p... 29 3.8
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 29 3.8
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 29 3.8
AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical ... 28 5.0
U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (sp... 27 8.8
U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 27 8.8
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 27 8.8
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 116 bits (279), Expect = 1e-26
Identities = 50/86 (58%), Positives = 66/86 (76%), Gaps = 1/86 (1%)
Frame = +3
Query: 399 MNKRVVLDKEMKVNWATSPGNQP-KTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISN 575
MNKR++LD+EMKVNWA PG Q K DT+ H H+FVGDLS E++ LREAF PFG++S+
Sbjct: 1 MNKRLLLDREMKVNWAVEPGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSD 60
Query: 576 CRIVRDPQTLKSKGYAFVSFVKKADA 653
+++RD T KSKGY FVS+ K+ +A
Sbjct: 61 AKVIRDTNTTKSKGYGFVSYPKREEA 86
Score = 35.5 bits (78), Expect = 0.033
Identities = 31/97 (31%), Positives = 45/97 (46%), Gaps = 15/97 (15%)
Frame = +3
Query: 399 MNKRVVLDKEMKVNWAT-SPGNQPKTDTSNHHH--------------IFVGDLSPEIETN 533
MN + + + ++ NWAT PG+Q K N ++VG+++ E
Sbjct: 93 MNGQWLGRRTIRTNWATRKPGDQEKPSHYNEKSYDEIYNQTSGDNTSVYVGNIASLTEDE 152
Query: 534 ILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKK 644
I R+ FA FG I+ RI K +GYAFV F K
Sbjct: 153 I-RQGFASFGRITEVRI------FKMQGYAFVKFDNK 182
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 116 bits (279), Expect = 1e-26
Identities = 50/86 (58%), Positives = 66/86 (76%), Gaps = 1/86 (1%)
Frame = +3
Query: 399 MNKRVVLDKEMKVNWATSPGNQP-KTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISN 575
MNKR++LD+EMKVNWA PG Q K DT+ H H+FVGDLS E++ LREAF PFG++S+
Sbjct: 104 MNKRLLLDREMKVNWAVEPGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSD 163
Query: 576 CRIVRDPQTLKSKGYAFVSFVKKADA 653
+++RD T KSKGY FVS+ K+ +A
Sbjct: 164 AKVIRDTNTTKSKGYGFVSYPKREEA 189
Score = 70.1 bits (164), Expect = 1e-12
Identities = 34/57 (59%), Positives = 41/57 (71%)
Frame = +2
Query: 200 NMGDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCH 370
N DE P+TLYVGNLD +VTE F+ TLF QIG V K+I + NDPYAF+EF+ H
Sbjct: 40 NGSDE--PRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDGSNDPYAFVEFSDH 94
Score = 35.5 bits (78), Expect = 0.033
Identities = 31/97 (31%), Positives = 45/97 (46%), Gaps = 15/97 (15%)
Frame = +3
Query: 399 MNKRVVLDKEMKVNWAT-SPGNQPKTDTSNHHH--------------IFVGDLSPEIETN 533
MN + + + ++ NWAT PG+Q K N ++VG+++ E
Sbjct: 196 MNGQWLGRRTIRTNWATRKPGDQEKPSHYNEKSYDEIYNQTSGDNTSVYVGNIASLTEDE 255
Query: 534 ILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKK 644
I R+ FA FG I+ RI K +GYAFV F K
Sbjct: 256 I-RQGFASFGRITEVRI------FKMQGYAFVKFDNK 285
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 104 bits (249), Expect = 6e-23
Identities = 46/86 (53%), Positives = 61/86 (70%), Gaps = 1/86 (1%)
Frame = +3
Query: 399 MNKRVVLDKEMKVNWATSPGNQP-KTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISN 575
+ K V+ EMKVNWA PG Q K DT+ H H+FVGDLS E++ LREAF PFG++S+
Sbjct: 72 VTKTKVIFDEMKVNWAVEPGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSD 131
Query: 576 CRIVRDPQTLKSKGYAFVSFVKKADA 653
+++RD T KSKGY FVS+ K+ +A
Sbjct: 132 AKVIRDTNTTKSKGYGFVSYPKREEA 157
Score = 49.6 bits (113), Expect = 2e-06
Identities = 25/41 (60%), Positives = 29/41 (70%)
Frame = +2
Query: 200 NMGDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKII 322
N DE P+TLYVGNLD +VTE F+ TLF QIG V K+I
Sbjct: 40 NGSDE--PRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVI 78
Score = 35.5 bits (78), Expect = 0.033
Identities = 31/97 (31%), Positives = 45/97 (46%), Gaps = 15/97 (15%)
Frame = +3
Query: 399 MNKRVVLDKEMKVNWAT-SPGNQPKTDTSNHHH--------------IFVGDLSPEIETN 533
MN + + + ++ NWAT PG+Q K N ++VG+++ E
Sbjct: 164 MNGQWLGRRTIRTNWATRKPGDQEKPSHYNEKSYDEIYNQTSGDNTSVYVGNIASLTEDE 223
Query: 534 ILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKK 644
I R+ FA FG I+ RI K +GYAFV F K
Sbjct: 224 I-RQGFASFGRITEVRI------FKMQGYAFVKFDNK 253
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 100 bits (239), Expect = 1e-21
Identities = 43/76 (56%), Positives = 56/76 (73%), Gaps = 1/76 (1%)
Frame = +3
Query: 429 MKVNWATSPGNQP-KTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTL 605
MKVNWA PG Q K DT+ H H+FVGDLS E++ LREAF PFG++S+ +++RD T
Sbjct: 1 MKVNWAVEPGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTT 60
Query: 606 KSKGYAFVSFVKKADA 653
KSKGY FVS+ K+ +A
Sbjct: 61 KSKGYGFVSYPKREEA 76
Score = 35.5 bits (78), Expect = 0.033
Identities = 31/97 (31%), Positives = 45/97 (46%), Gaps = 15/97 (15%)
Frame = +3
Query: 399 MNKRVVLDKEMKVNWAT-SPGNQPKTDTSNHHH--------------IFVGDLSPEIETN 533
MN + + + ++ NWAT PG+Q K N ++VG+++ E
Sbjct: 83 MNGQWLGRRTIRTNWATRKPGDQEKPSHYNEKSYDEIYNQTSGDNTSVYVGNIASLTEDE 142
Query: 534 ILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKK 644
I R+ FA FG I+ RI K +GYAFV F K
Sbjct: 143 I-RQGFASFGRITEVRI------FKMQGYAFVKFDNK 172
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 93.9 bits (223), Expect = 9e-20
Identities = 45/88 (51%), Positives = 58/88 (65%), Gaps = 4/88 (4%)
Frame = +3
Query: 402 NKRVVLDKEMKVNWATSPG----NQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEI 569
N R +L+KEM V WA P N+ K +TS H H+FVGDL EI++ LREAF FGE+
Sbjct: 99 NGRELLEKEMHVTWAFEPREPGENRSKPETSRHFHVFVGDLCSEIDSTKLREAFVKFGEV 158
Query: 570 SNCRIVRDPQTLKSKGYAFVSFVKKADA 653
S +I+RD T K KGY FVS+ ++ DA
Sbjct: 159 SEAKIIRDNNTNKGKGYGFVSYPRREDA 186
Score = 68.1 bits (159), Expect = 5e-12
Identities = 31/50 (62%), Positives = 38/50 (76%)
Frame = +2
Query: 221 PKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCH 370
P+TL+V NLDP++T+ FL TLF QIG V KII E NDPYAF+EF+ H
Sbjct: 39 PRTLFVANLDPAITDEFLATLFNQIGAVMKAKIIFEGLNDPYAFVEFSDH 88
Score = 31.1 bits (67), Expect = 0.71
Identities = 24/65 (36%), Positives = 33/65 (50%)
Frame = +3
Query: 459 NQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFV 638
NQ D ++ ++VG+++ E I R AF FG I+ R T K +GYAFV F
Sbjct: 249 NQAAADNTS---VYVGNIANLGEDEI-RRAFDRFGPINEVR------TFKIQGYAFVKFE 298
Query: 639 KKADA 653
K A
Sbjct: 299 TKESA 303
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 84.6 bits (200), Expect = 5e-17
Identities = 36/81 (44%), Positives = 53/81 (65%)
Frame = +3
Query: 411 VVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVR 590
+VL + ++ A+ P + + DTS H H+FVGDLS ++ +L+ F FGE+S +++R
Sbjct: 109 IVLQESAVLHSASEPPMEMRIDTSKHFHVFVGDLSKDVSNELLKSTFTKFGEVSEAKVIR 168
Query: 591 DPQTLKSKGYAFVSFVKKADA 653
D QT KSKGY FVSF K +A
Sbjct: 169 DVQTQKSKGYGFVSFPNKQNA 189
Score = 34.3 bits (75), Expect = 0.077
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 11/93 (11%)
Frame = +3
Query: 399 MNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIF-----------VGDLSPEIETNILRE 545
MN + + + ++ NWA ++ D +F VG++S + LR+
Sbjct: 196 MNGKWIGKRAVRTNWAARKNSEENRDKLTFEQVFNSTKADNTSVYVGNISQQTTDADLRD 255
Query: 546 AFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKK 644
F+ +G+I+ RI K++ YAFV + KK
Sbjct: 256 LFSTYGDIAEVRI------FKTQRYAFVRYEKK 282
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +2
Query: 227 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEF 361
++YVGN+ T+ L LF GD+ +I + YAF+ +
Sbjct: 238 SVYVGNISQQTTDADLRDLFSTYGDIAEVRIFK---TQRYAFVRY 279
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 53.2 bits (122), Expect = 2e-07
Identities = 26/70 (37%), Positives = 39/70 (55%)
Frame = +3
Query: 444 ATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYA 623
A PG + ++VGDL P++ +IL E F+ G + + R+ RD T S GYA
Sbjct: 17 APQPGQNQTGSSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYA 76
Query: 624 FVSFVKKADA 653
+V+F + ADA
Sbjct: 77 YVNFQQPADA 86
Score = 41.9 bits (94), Expect = 4e-04
Identities = 24/79 (30%), Positives = 38/79 (48%)
Frame = +3
Query: 399 MNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNC 578
MN + K M++ W+ P S +IF+ +L I+ + + F+ FG I +C
Sbjct: 93 MNFEALHGKPMRIMWSQ---RDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILSC 149
Query: 579 RIVRDPQTLKSKGYAFVSF 635
++ D SKGY FV F
Sbjct: 150 KVAIDEDGF-SKGYGFVHF 167
Score = 34.3 bits (75), Expect = 0.077
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +3
Query: 492 HIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADA 653
+++V + L + FA FG I++C ++ KSKG+ FV+F +A
Sbjct: 214 NVYVKNFGDHYNKETLEKVFAKFGNITSCEVMTVEG--KSKGFGFVAFANPEEA 265
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 53.2 bits (122), Expect = 2e-07
Identities = 26/70 (37%), Positives = 39/70 (55%)
Frame = +3
Query: 444 ATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYA 623
A PG + ++VGDL P++ +IL E F+ G + + R+ RD T S GYA
Sbjct: 17 APQPGQNQTGSSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYA 76
Query: 624 FVSFVKKADA 653
+V+F + ADA
Sbjct: 77 YVNFQQPADA 86
Score = 33.9 bits (74), Expect = 0.10
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +3
Query: 492 HIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADA 653
+++V + L + FA FG I++C ++ KSKG+ FV+F +A
Sbjct: 154 NVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEG--KSKGFGFVAFANPEEA 205
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 53.2 bits (122), Expect = 2e-07
Identities = 26/70 (37%), Positives = 39/70 (55%)
Frame = +3
Query: 444 ATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYA 623
A PG + ++VGDL P++ +IL E F+ G + + R+ RD T S GYA
Sbjct: 17 APQPGQNQTGSSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYA 76
Query: 624 FVSFVKKADA 653
+V+F + ADA
Sbjct: 77 YVNFQQPADA 86
Score = 41.9 bits (94), Expect = 4e-04
Identities = 24/79 (30%), Positives = 38/79 (48%)
Frame = +3
Query: 399 MNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNC 578
MN + K M++ W+ P S +IF+ +L I+ + + F+ FG I +C
Sbjct: 93 MNFEALHGKPMRIMWSQ---RDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILSC 149
Query: 579 RIVRDPQTLKSKGYAFVSF 635
++ D SKGY FV F
Sbjct: 150 KVAIDEDGF-SKGYGFVHF 167
Score = 33.9 bits (74), Expect = 0.10
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +3
Query: 492 HIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADA 653
+++V + L + FA FG I++C ++ KSKG+ FV+F +A
Sbjct: 214 NVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEG--KSKGFGFVAFANPEEA 265
>AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily
assigned gene nameprotein 262 protein.
Length = 302
Score = 53.2 bits (122), Expect = 2e-07
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Frame = +3
Query: 405 KRVVLDKEMKVNWATSPGNQPKTDTS------NHHHIFVGDLSPEIETNILREAFAPFGE 566
K+ + +++ K + S G Q D S N +F GDL E+ +L +AF +
Sbjct: 169 KKKIKEQQAKKKFVRSGGGQVWEDPSLAEWDENDFRVFCGDLGNEVSDELLAKAFRKYPS 228
Query: 567 ISNCRIVRDPQTLKSKGYAFVSFVKKAD 650
++VR+ +T KSKGY FVSF D
Sbjct: 229 FQKAKVVRESRTNKSKGYGFVSFRDSED 256
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 52.4 bits (120), Expect = 3e-07
Identities = 26/61 (42%), Positives = 37/61 (60%)
Frame = +3
Query: 471 TDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAD 650
T+ N +F+G LS + LRE FA FG I +C ++RD Q KS+G AFV+F ++
Sbjct: 136 TENRNERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRD-QDGKSRGCAFVTFTNRSC 194
Query: 651 A 653
A
Sbjct: 195 A 195
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/65 (33%), Positives = 33/65 (50%)
Frame = +3
Query: 459 NQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFV 638
++P TD +FVG + + R F +G + +C I+RD T SKG FV+F
Sbjct: 48 SEPDTDAIK---MFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFY 104
Query: 639 KKADA 653
+ DA
Sbjct: 105 HRKDA 109
Score = 31.5 bits (68), Expect = 0.54
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +3
Query: 492 HIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 635
++F+ L + + L FAPFG I + ++ D T SK + FVS+
Sbjct: 500 NLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSY 547
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +2
Query: 209 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP--YAFLEFT 364
+ + + L++G L E L +F + G ++ C ++R+ AF+ FT
Sbjct: 137 ENRNERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFT 190
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 52.4 bits (120), Expect = 3e-07
Identities = 26/61 (42%), Positives = 37/61 (60%)
Frame = +3
Query: 471 TDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAD 650
T+ N +F+G LS + LRE FA FG I +C ++RD Q KS+G AFV+F ++
Sbjct: 136 TENRNERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRD-QDGKSRGCAFVTFTNRSC 194
Query: 651 A 653
A
Sbjct: 195 A 195
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/65 (33%), Positives = 33/65 (50%)
Frame = +3
Query: 459 NQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFV 638
++P TD +FVG + + R F +G + +C I+RD T SKG FV+F
Sbjct: 48 SEPDTDAIK---MFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFY 104
Query: 639 KKADA 653
+ DA
Sbjct: 105 HRKDA 109
Score = 31.5 bits (68), Expect = 0.54
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +3
Query: 492 HIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 635
++F+ L + + L FAPFG I + ++ D T SK + FVS+
Sbjct: 500 NLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSY 547
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +2
Query: 209 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP--YAFLEFT 364
+ + + L++G L E L +F + G ++ C ++R+ AF+ FT
Sbjct: 137 ENRNERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFT 190
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 52.4 bits (120), Expect = 3e-07
Identities = 26/61 (42%), Positives = 37/61 (60%)
Frame = +3
Query: 471 TDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAD 650
T+ N +F+G LS + LRE FA FG I +C ++RD Q KS+G AFV+F ++
Sbjct: 136 TENRNERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRD-QDGKSRGCAFVTFTNRSC 194
Query: 651 A 653
A
Sbjct: 195 A 195
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/65 (33%), Positives = 33/65 (50%)
Frame = +3
Query: 459 NQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFV 638
++P TD +FVG + + R F +G + +C I+RD T SKG FV+F
Sbjct: 48 SEPDTDAIK---MFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFY 104
Query: 639 KKADA 653
+ DA
Sbjct: 105 HRKDA 109
Score = 31.5 bits (68), Expect = 0.54
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +3
Query: 492 HIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 635
++F+ L + + L FAPFG I + ++ D T SK + FVS+
Sbjct: 429 NLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSY 476
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +2
Query: 209 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP--YAFLEFT 364
+ + + L++G L E L +F + G ++ C ++R+ AF+ FT
Sbjct: 137 ENRNERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFT 190
>EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA
binding protein variantD protein.
Length = 327
Score = 52.4 bits (120), Expect = 3e-07
Identities = 26/61 (42%), Positives = 37/61 (60%)
Frame = +3
Query: 471 TDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAD 650
T+ N +F+G LS + LRE FA FG I +C ++RD Q KS+G AFV+F ++
Sbjct: 136 TENRNERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRD-QDGKSRGCAFVTFTNRSC 194
Query: 651 A 653
A
Sbjct: 195 A 195
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/65 (33%), Positives = 33/65 (50%)
Frame = +3
Query: 459 NQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFV 638
++P TD +FVG + + R F +G + +C I+RD T SKG FV+F
Sbjct: 48 SEPDTDAIK---MFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFY 104
Query: 639 KKADA 653
+ DA
Sbjct: 105 HRKDA 109
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +2
Query: 209 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP--YAFLEFT 364
+ + + L++G L E L +F + G ++ C ++R+ AF+ FT
Sbjct: 137 ENRNERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFT 190
>EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA
binding protein variantC protein.
Length = 378
Score = 52.4 bits (120), Expect = 3e-07
Identities = 26/61 (42%), Positives = 37/61 (60%)
Frame = +3
Query: 471 TDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAD 650
T+ N +F+G LS + LRE FA FG I +C ++RD Q KS+G AFV+F ++
Sbjct: 136 TENRNERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRD-QDGKSRGCAFVTFTNRSC 194
Query: 651 A 653
A
Sbjct: 195 A 195
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/65 (33%), Positives = 33/65 (50%)
Frame = +3
Query: 459 NQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFV 638
++P TD +FVG + + R F +G + +C I+RD T SKG FV+F
Sbjct: 48 SEPDTDAIK---MFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFY 104
Query: 639 KKADA 653
+ DA
Sbjct: 105 HRKDA 109
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +2
Query: 209 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP--YAFLEFT 364
+ + + L++G L E L +F + G ++ C ++R+ AF+ FT
Sbjct: 137 ENRNERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFT 190
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 52.4 bits (120), Expect = 3e-07
Identities = 26/61 (42%), Positives = 37/61 (60%)
Frame = +3
Query: 471 TDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAD 650
T+ N +F+G LS + LRE FA FG I +C ++RD Q KS+G AFV+F ++
Sbjct: 136 TENRNERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRD-QDGKSRGCAFVTFTNRSC 194
Query: 651 A 653
A
Sbjct: 195 A 195
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/65 (33%), Positives = 33/65 (50%)
Frame = +3
Query: 459 NQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFV 638
++P TD +FVG + + R F +G + +C I+RD T SKG FV+F
Sbjct: 48 SEPDTDAIK---MFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFY 104
Query: 639 KKADA 653
+ DA
Sbjct: 105 HRKDA 109
Score = 31.5 bits (68), Expect = 0.54
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +3
Query: 492 HIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 635
++F+ L + + L FAPFG I + ++ D T SK + FVS+
Sbjct: 500 NLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSY 547
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +2
Query: 209 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP--YAFLEFT 364
+ + + L++G L E L +F + G ++ C ++R+ AF+ FT
Sbjct: 137 ENRNERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFT 190
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 52.0 bits (119), Expect = 4e-07
Identities = 23/72 (31%), Positives = 42/72 (58%)
Frame = +3
Query: 423 KEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQT 602
+E ++N + G+ D +F+G LS + LR+ F FGE++ C ++RDP T
Sbjct: 26 EEARLNADSDDGSHGSQDPGK---MFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPAT 82
Query: 603 LKSKGYAFVSFV 638
+++G+ F++FV
Sbjct: 83 KRARGFGFITFV 94
Score = 31.1 bits (67), Expect = 0.71
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Frame = +2
Query: 197 ANMGDESH----PKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP 331
A+ D SH P +++G L T L FG+ G+V C ++R+P
Sbjct: 32 ADSDDGSHGSQDPGKMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDP 80
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 52.0 bits (119), Expect = 4e-07
Identities = 22/59 (37%), Positives = 38/59 (64%)
Frame = +3
Query: 474 DTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAD 650
+ N IFVG L+ +++RE ++ FGEI++ ++RDP T +S+G+ FV+F K +
Sbjct: 18 EPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTE 76
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 52.0 bits (119), Expect = 4e-07
Identities = 22/59 (37%), Positives = 38/59 (64%)
Frame = +3
Query: 474 DTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAD 650
+ N IFVG L+ +++RE ++ FGEI++ ++RDP T +S+G+ FV+F K +
Sbjct: 18 EPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTE 76
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 52.0 bits (119), Expect = 4e-07
Identities = 22/59 (37%), Positives = 38/59 (64%)
Frame = +3
Query: 474 DTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAD 650
+ N IFVG L+ +++RE ++ FGEI++ ++RDP T +S+G+ FV+F K +
Sbjct: 18 EPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTE 76
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 52.0 bits (119), Expect = 4e-07
Identities = 23/72 (31%), Positives = 42/72 (58%)
Frame = +3
Query: 423 KEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQT 602
+E ++N + G+ D +F+G LS + LR+ F FGE++ C ++RDP T
Sbjct: 26 EEARLNADSDDGSHGSQDPGK---MFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPAT 82
Query: 603 LKSKGYAFVSFV 638
+++G+ F++FV
Sbjct: 83 KRARGFGFITFV 94
Score = 31.1 bits (67), Expect = 0.71
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Frame = +2
Query: 197 ANMGDESH----PKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP 331
A+ D SH P +++G L T L FG+ G+V C ++R+P
Sbjct: 32 ADSDDGSHGSQDPGKMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDP 80
>U28944-8|AAK68193.1| 103|Caenorhabditis elegans Hypothetical
protein C18A3.5c protein.
Length = 103
Score = 49.6 bits (113), Expect = 2e-06
Identities = 25/41 (60%), Positives = 29/41 (70%)
Frame = +2
Query: 200 NMGDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKII 322
N DE P+TLYVGNLD +VTE F+ TLF QIG V K+I
Sbjct: 40 NGSDE--PRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVI 78
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 47.2 bits (107), Expect = 1e-05
Identities = 22/63 (34%), Positives = 37/63 (58%)
Frame = +3
Query: 465 PKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKK 644
P T + +++GDL P++ +L E F+ G + + R+ RD + S GYA+V+F +
Sbjct: 49 PPNATYSMASLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQP 108
Query: 645 ADA 653
ADA
Sbjct: 109 ADA 111
Score = 44.4 bits (100), Expect = 7e-05
Identities = 23/79 (29%), Positives = 41/79 (51%)
Frame = +3
Query: 399 MNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNC 578
MN V+ + M++ W+ P + + +IF+ +L I+ + + F+ FG I +C
Sbjct: 118 MNFEVIHGRPMRIMWSQ---RDPAARRAGNGNIFIKNLDRVIDNKSVYDTFSLFGNILSC 174
Query: 579 RIVRDPQTLKSKGYAFVSF 635
++ D + SKGY FV F
Sbjct: 175 KVATDDEG-NSKGYGFVHF 192
Score = 33.9 bits (74), Expect = 0.10
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = +3
Query: 492 HIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 635
++FV + ++ L F+ FGEI++ ++ D Q K KG+ FV+F
Sbjct: 239 NVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQG-KPKGFGFVAF 285
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 47.2 bits (107), Expect = 1e-05
Identities = 22/63 (34%), Positives = 37/63 (58%)
Frame = +3
Query: 465 PKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKK 644
P T + +++GDL P++ +L E F+ G + + R+ RD + S GYA+V+F +
Sbjct: 49 PPNATYSMASLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQP 108
Query: 645 ADA 653
ADA
Sbjct: 109 ADA 111
Score = 44.4 bits (100), Expect = 7e-05
Identities = 23/79 (29%), Positives = 41/79 (51%)
Frame = +3
Query: 399 MNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNC 578
MN V+ + M++ W+ P + + +IF+ +L I+ + + F+ FG I +C
Sbjct: 118 MNFEVIHGRPMRIMWSQ---RDPAARRAGNGNIFIKNLDRVIDNKSVYDTFSLFGNILSC 174
Query: 579 RIVRDPQTLKSKGYAFVSF 635
++ D + SKGY FV F
Sbjct: 175 KVATDDEG-NSKGYGFVHF 192
Score = 33.9 bits (74), Expect = 0.10
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = +3
Query: 492 HIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 635
++FV + ++ L F+ FGEI++ ++ D Q K KG+ FV+F
Sbjct: 239 NVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQG-KPKGFGFVAF 285
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 47.2 bits (107), Expect = 1e-05
Identities = 28/80 (35%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Frame = +3
Query: 399 MNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNC 578
+N + K +KVN A++ ++ D + IFVG+L PE++ +L + F+ FG I
Sbjct: 74 LNMIKLYGKPIKVNKASA--HEKNMDVGAN--IFVGNLDPEVDEKLLYDTFSAFGVILQV 129
Query: 579 -RIVRDPQTLKSKGYAFVSF 635
+I+RD + SKG+AF++F
Sbjct: 130 PKIMRDVDSGTSKGFAFINF 149
Score = 27.5 bits (58), Expect = 8.8
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Frame = +2
Query: 230 LYVGNLDPSVTEVFLCTLFGQIGDV-KGCKIIREPGNDP---YAFLEF 361
++VGNLDP V E L F G + + KI+R+ + +AF+ F
Sbjct: 102 IFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINF 149
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 47.2 bits (107), Expect = 1e-05
Identities = 28/80 (35%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Frame = +3
Query: 399 MNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNC 578
+N + K +KVN A++ ++ D + IFVG+L PE++ +L + F+ FG I
Sbjct: 84 LNMIKLYGKPIKVNKASA--HEKNMDVGAN--IFVGNLDPEVDEKLLYDTFSAFGVILQV 139
Query: 579 -RIVRDPQTLKSKGYAFVSF 635
+I+RD + SKG+AF++F
Sbjct: 140 PKIMRDVDSGTSKGFAFINF 159
Score = 27.5 bits (58), Expect = 8.8
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Frame = +2
Query: 230 LYVGNLDPSVTEVFLCTLFGQIGDV-KGCKIIREPGNDP---YAFLEF 361
++VGNLDP V E L F G + + KI+R+ + +AF+ F
Sbjct: 112 IFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINF 159
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 44.4 bits (100), Expect = 7e-05
Identities = 25/63 (39%), Positives = 39/63 (61%)
Frame = +3
Query: 465 PKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKK 644
P +DT+ + +FV +LS + + +L + F+ FG I N +I+RD T + KGYAFVS
Sbjct: 367 PPSDTAGYC-LFVYNLSSDTDDTLLWQLFSQFGAIVNVKILRD-LTQQCKGYAFVSMSNY 424
Query: 645 ADA 653
+A
Sbjct: 425 TEA 427
Score = 43.6 bits (98), Expect = 1e-04
Identities = 18/39 (46%), Positives = 27/39 (69%)
Frame = +3
Query: 537 LREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADA 653
+R F GEI +C++VRD T +S GY FV++V++ DA
Sbjct: 58 VRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDA 96
Score = 43.2 bits (97), Expect = 2e-04
Identities = 26/78 (33%), Positives = 40/78 (51%)
Frame = +3
Query: 420 DKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQ 599
+K +KV++A +P D +++V + + + L F PFG+I RI+ D
Sbjct: 110 NKTIKVSYA-----RPSNDQIKGSNLYVSGIPKSMTLHELESIFRPFGQIITSRILSDNV 164
Query: 600 TLKSKGYAFVSFVKKADA 653
T SKG FV F KK +A
Sbjct: 165 TGLSKGVGFVRFDKKDEA 182
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +2
Query: 209 DESHPKT-LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIRE 328
D KT L + L +T+ + +LF IG+++ CK++R+
Sbjct: 36 DIGESKTNLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRD 76
>AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical
protein F58D5.1 protein.
Length = 611
Score = 44.4 bits (100), Expect = 7e-05
Identities = 20/55 (36%), Positives = 33/55 (60%)
Frame = +3
Query: 489 HHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADA 653
H I+VG + ++ + L F G+I + R++ DP + S+GYAFV++ K DA
Sbjct: 200 HEIYVGHIPTDVFEDTLVPLFEKSGKIWDLRLMMDPMSGASRGYAFVTYCNKEDA 254
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 44.0 bits (99), Expect = 9e-05
Identities = 20/59 (33%), Positives = 31/59 (52%)
Frame = +3
Query: 459 NQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 635
N T + IFVG +SPE+ L F +GE++ ++ D +S+G+AFV F
Sbjct: 19 NGHSTKGNEDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEF 77
Score = 33.1 bits (72), Expect = 0.18
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +3
Query: 495 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADA 653
+FVG L + LR F FG++ + D QT + +AF+ F ++ A
Sbjct: 112 VFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESA 164
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Frame = +2
Query: 224 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGND---PYAFLEFTCHTGGGHSAG 394
K ++VG + P V L + F Q G+V ++ + N +AF+EFT G +
Sbjct: 29 KKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALA 88
Query: 395 RHEQ 406
EQ
Sbjct: 89 AREQ 92
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 44.0 bits (99), Expect = 9e-05
Identities = 20/59 (33%), Positives = 31/59 (52%)
Frame = +3
Query: 459 NQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 635
N T + IFVG +SPE+ L F +GE++ ++ D +S+G+AFV F
Sbjct: 19 NGHSTKGNEDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEF 77
Score = 33.1 bits (72), Expect = 0.18
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +3
Query: 495 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADA 653
+FVG L + LR F FG++ + D QT + +AF+ F ++ A
Sbjct: 112 VFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESA 164
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Frame = +2
Query: 224 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGND---PYAFLEFTCHTGGGHSAG 394
K ++VG + P V L + F Q G+V ++ + N +AF+EFT G +
Sbjct: 29 KKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALA 88
Query: 395 RHEQ 406
EQ
Sbjct: 89 AREQ 92
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 43.6 bits (98), Expect = 1e-04
Identities = 21/47 (44%), Positives = 29/47 (61%)
Frame = +3
Query: 495 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 635
I+VG +S EI ++LR AF PFG I + + DP T K +AFV +
Sbjct: 104 IYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEY 150
Score = 39.5 bits (88), Expect = 0.002
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +3
Query: 474 DTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 635
D + ++V + P++ L+ F FGEI C++ R P +G+ ++ F
Sbjct: 202 DAKKYFRVYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEF 255
Score = 31.5 bits (68), Expect = 0.54
Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Frame = +2
Query: 230 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP---GNDPYAFLEF 361
+YV ++ P ++E L ++F G++ C++ R P G+ + +LEF
Sbjct: 209 VYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEF 255
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 43.6 bits (98), Expect = 1e-04
Identities = 21/47 (44%), Positives = 29/47 (61%)
Frame = +3
Query: 495 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 635
I+VG +S EI ++LR AF PFG I + + DP T K +AFV +
Sbjct: 104 IYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEY 150
Score = 39.5 bits (88), Expect = 0.002
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +3
Query: 474 DTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 635
D + ++V + P++ L+ F FGEI C++ R P +G+ ++ F
Sbjct: 202 DAKKYFRVYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEF 255
Score = 31.5 bits (68), Expect = 0.54
Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Frame = +2
Query: 230 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP---GNDPYAFLEF 361
+YV ++ P ++E L ++F G++ C++ R P G+ + +LEF
Sbjct: 209 VYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEF 255
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 43.6 bits (98), Expect = 1e-04
Identities = 21/47 (44%), Positives = 29/47 (61%)
Frame = +3
Query: 495 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 635
I+VG +S EI ++LR AF PFG I + + DP T K +AFV +
Sbjct: 104 IYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEY 150
Score = 39.5 bits (88), Expect = 0.002
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +3
Query: 474 DTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 635
D + ++V + P++ L+ F FGEI C++ R P +G+ ++ F
Sbjct: 202 DAKKYFRVYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEF 255
Score = 31.5 bits (68), Expect = 0.54
Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Frame = +2
Query: 230 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP---GNDPYAFLEF 361
+YV ++ P ++E L ++F G++ C++ R P G+ + +LEF
Sbjct: 209 VYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEF 255
>EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA
binding protein variantB protein.
Length = 193
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/65 (33%), Positives = 33/65 (50%)
Frame = +3
Query: 459 NQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFV 638
++P TD +FVG + + R F +G + +C I+RD T SKG FV+F
Sbjct: 48 SEPDTDAIK---MFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFY 104
Query: 639 KKADA 653
+ DA
Sbjct: 105 HRKDA 109
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/49 (42%), Positives = 29/49 (59%)
Frame = +3
Query: 471 TDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKG 617
T+ N +F+G LS + LRE FA FG I +C ++RD Q KS+G
Sbjct: 136 TENRNERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRD-QDGKSRG 183
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/53 (20%), Positives = 23/53 (43%)
Frame = +2
Query: 209 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTC 367
+ + + L++G L E L +F + G ++ C ++R+ L C
Sbjct: 137 ENRNERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGMLSAAC 189
>U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 7 protein.
Length = 332
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/67 (29%), Positives = 35/67 (52%)
Frame = +3
Query: 450 SPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFV 629
+P P+ + +FVG ++ E + LR F +G+I +V D + K +GYAF+
Sbjct: 91 NPAENPRASEDPYRTLFVGRINYETSESKLRREFEAYGKIKKLTMVHD-EAGKPRGYAFI 149
Query: 630 SFVKKAD 650
+ KA+
Sbjct: 150 EYSDKAE 156
>AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor
protein 12 protein.
Length = 248
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/53 (39%), Positives = 27/53 (50%)
Frame = +3
Query: 495 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADA 653
IFVG L L E F FG+I ++ D T KS+GY FV+ +A A
Sbjct: 37 IFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRASA 89
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 42.3 bits (95), Expect = 3e-04
Identities = 16/47 (34%), Positives = 30/47 (63%)
Frame = +3
Query: 495 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 635
+FVG++S ++ + +R F+ G + + ++V D +T K KGY F+ F
Sbjct: 20 VFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEF 66
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 41.9 bits (94), Expect = 4e-04
Identities = 24/79 (30%), Positives = 38/79 (48%)
Frame = +3
Query: 399 MNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNC 578
MN + K M++ W+ P S +IF+ +L I+ + + F+ FG I +C
Sbjct: 30 MNFEALHGKPMRIMWSQ---RDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILSC 86
Query: 579 RIVRDPQTLKSKGYAFVSF 635
++ D SKGY FV F
Sbjct: 87 KVAIDEDGF-SKGYGFVHF 104
Score = 33.9 bits (74), Expect = 0.10
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +3
Query: 492 HIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADA 653
+++V + L + FA FG I++C ++ KSKG+ FV+F +A
Sbjct: 151 NVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEG--KSKGFGFVAFANPEEA 202
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 41.5 bits (93), Expect = 5e-04
Identities = 17/47 (36%), Positives = 29/47 (61%)
Frame = +3
Query: 495 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 635
I++G LS + + F+ +GE+ N ++RD T KSKG+AF+ +
Sbjct: 40 IYIGGLSYALSEGDVIAVFSQYGEVMNINLIRDKDTGKSKGFAFLCY 86
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +2
Query: 230 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCH 370
+Y+G L +++E + +F Q G+V +IR+ F C+
Sbjct: 40 IYIGGLSYALSEGDVIAVFSQYGEVMNINLIRDKDTGKSKGFAFLCY 86
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 41.5 bits (93), Expect = 5e-04
Identities = 16/38 (42%), Positives = 28/38 (73%)
Frame = +3
Query: 537 LREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAD 650
+RE ++ FGEI++ ++RDP T +S+G+ FV+F K +
Sbjct: 1 MREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTE 38
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 41.5 bits (93), Expect = 5e-04
Identities = 16/38 (42%), Positives = 28/38 (73%)
Frame = +3
Query: 537 LREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAD 650
+RE ++ FGEI++ ++RDP T +S+G+ FV+F K +
Sbjct: 1 MREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTE 38
>Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical
protein F11A10.7 protein.
Length = 394
Score = 41.1 bits (92), Expect = 7e-04
Identities = 24/48 (50%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +3
Query: 495 IFVGDLSPEIETNILREAF-APFGEISNCRIVRDPQTLKSKGYAFVSF 635
IFVG+L EI + L F A G + RIVRD T K KG+AFV+F
Sbjct: 248 IFVGNLPFEITEDALITFFSAQIGPVEAVRIVRDKDTGKGKGFAFVNF 295
Score = 30.7 bits (66), Expect = 0.94
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Frame = +2
Query: 230 LYVGNLDPSVTEVFLCTLF-GQIGDVKGCKIIREPGNDP---YAFLEF 361
++VGNL +TE L T F QIG V+ +I+R+ +AF+ F
Sbjct: 248 IFVGNLPFEITEDALITFFSAQIGPVEAVRIVRDKDTGKGKGFAFVNF 295
>U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform b protein.
Length = 126
Score = 41.1 bits (92), Expect = 7e-04
Identities = 19/51 (37%), Positives = 30/51 (58%)
Frame = +3
Query: 501 VGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADA 653
+ +LS + N LR F +G+I + I RD + +SKG+ FV F ++ DA
Sbjct: 23 IDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDA 73
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 41.1 bits (92), Expect = 7e-04
Identities = 19/51 (37%), Positives = 30/51 (58%)
Frame = +3
Query: 501 VGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADA 653
+ +LS + N LR F +G+I + I RD + +SKG+ FV F ++ DA
Sbjct: 23 IDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDA 73
>Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/47 (42%), Positives = 28/47 (59%)
Frame = +3
Query: 495 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 635
+FV L+P L F+ FG+I+NC IVRD ++ S YAF+ F
Sbjct: 243 LFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEF 289
Score = 34.3 bits (75), Expect = 0.077
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Frame = +2
Query: 209 DESHPKT-LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIRE--PGND-PYAFLEF 361
DE P+ L+V L+P T+ L +F + G + C+I+R+ G+ YAF+EF
Sbjct: 235 DEVPPENVLFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEF 289
>Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/47 (42%), Positives = 28/47 (59%)
Frame = +3
Query: 495 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 635
+FV L+P L F+ FG+I+NC IVRD ++ S YAF+ F
Sbjct: 243 LFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEF 289
Score = 34.3 bits (75), Expect = 0.077
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Frame = +2
Query: 209 DESHPKT-LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIRE--PGND-PYAFLEF 361
DE P+ L+V L+P T+ L +F + G + C+I+R+ G+ YAF+EF
Sbjct: 235 DEVPPENVLFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEF 289
>Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical
protein F39H2.2b protein.
Length = 358
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/47 (42%), Positives = 28/47 (59%)
Frame = +3
Query: 495 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 635
+FV L+P L F+ FG+I+NC IVRD ++ S YAF+ F
Sbjct: 174 LFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEF 220
Score = 34.3 bits (75), Expect = 0.077
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Frame = +2
Query: 209 DESHPKT-LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIRE--PGND-PYAFLEF 361
DE P+ L+V L+P T+ L +F + G + C+I+R+ G+ YAF+EF
Sbjct: 166 DEVPPENVLFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEF 220
>Z69384-5|CAA93419.2| 408|Caenorhabditis elegans Hypothetical
protein T11G6.8 protein.
Length = 408
Score = 39.5 bits (88), Expect = 0.002
Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Frame = +2
Query: 227 TLYVGNLDPS----VTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHTGGGHSAG 394
TLY+GNL PS VTE L F Q GD++ +++ E G AF+EFT +A
Sbjct: 236 TLYIGNLGPSGAQQVTEKDLNDFFYQYGDIRCLRVLTEKG---CAFIEFTTREAAERAAE 292
Query: 395 R 397
R
Sbjct: 293 R 293
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/53 (35%), Positives = 32/53 (60%)
Frame = +3
Query: 495 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADA 653
++VG+ + + L F+ G +SN RIV D +T + +G+AFV F ++A A
Sbjct: 6 VYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAA 58
>Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical
protein R10E4.2a protein.
Length = 357
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Frame = +3
Query: 447 TSP-GNQPKTDTS--NHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKG 617
T+P G+Q D++ + ++++ L P ++LRE + +G I++ + + D T KG
Sbjct: 64 TAPRGDQQHHDSTPLSSTNLYIRGLMPNTNDDLLREMCSKYGNIASTKAIMDKATNNCKG 123
Query: 618 YAFVSF 635
Y FV F
Sbjct: 124 YGFVDF 129
Score = 31.1 bits (67), Expect = 0.71
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +2
Query: 212 ESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGN 337
E P LY+ NL TE L T + G V +I+R P N
Sbjct: 158 EQDPTNLYIANLPLDFTEQMLETELNKFGMVISTRILRTPDN 199
>AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical
protein Y116A8C.34 protein.
Length = 331
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = +3
Query: 495 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADA 653
++VG + ++ +L AF PFG++ I D ++ K +G+ FV F DA
Sbjct: 13 LYVGGFTEDVTEKVLMAAFIPFGDVVAISIPMDYESGKHRGFGFVEFDMAEDA 65
>AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical
protein H28G03.1b protein.
Length = 315
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +3
Query: 495 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 635
+F+G LS + L F+ +G + + ++RDP T S+G+ FV+F
Sbjct: 51 LFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTF 97
>AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical
protein H28G03.1c protein.
Length = 335
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +3
Query: 495 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 635
+F+G LS + L F+ +G + + ++RDP T S+G+ FV+F
Sbjct: 71 LFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTF 117
>AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical
protein H28G03.1a protein.
Length = 336
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +3
Query: 495 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 635
+F+G LS + L F+ +G + + ++RDP T S+G+ FV+F
Sbjct: 72 LFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTF 118
>Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical
protein R10E4.2b protein.
Length = 409
Score = 38.7 bits (86), Expect = 0.004
Identities = 16/53 (30%), Positives = 29/53 (54%)
Frame = +3
Query: 477 TSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 635
T + ++++ L P ++LRE + +G I++ + + D T KGY FV F
Sbjct: 103 TPSSTNLYIRGLMPNTNDDLLREMCSKYGNIASTKAIMDKATNNCKGYGFVDF 155
Score = 31.1 bits (67), Expect = 0.71
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +2
Query: 212 ESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGN 337
E P LY+ NL TE L T + G V +I+R P N
Sbjct: 184 EQDPTNLYIANLPLDFTEQMLETELNKFGMVISTRILRTPDN 225
>U23172-14|AAL02495.1| 165|Caenorhabditis elegans Hypothetical
protein F25B5.7b protein.
Length = 165
Score = 38.7 bits (86), Expect = 0.004
Identities = 20/61 (32%), Positives = 32/61 (52%)
Frame = +3
Query: 465 PKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKK 644
PK + +FVG+L E++ L+E F+P G+I+ C L KG+AF+ +
Sbjct: 108 PKKKFTGRCRLFVGNLPNEVKETELKELFSPHGDIAEC-------YLSGKGFAFLRLISN 160
Query: 645 A 647
A
Sbjct: 161 A 161
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 38.3 bits (85), Expect = 0.005
Identities = 17/53 (32%), Positives = 31/53 (58%)
Frame = +3
Query: 495 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADA 653
++VG+ + L F+ G+I+N RIV D +T + +G+AF+ F ++ A
Sbjct: 7 VYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSA 59
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/53 (33%), Positives = 32/53 (60%)
Frame = +3
Query: 495 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADA 653
++VG++ + + FA G ++N RIV D +T + +G+AFV F ++A A
Sbjct: 8 VYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGA 60
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = +2
Query: 227 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGND-PYAFLEFTCHTG 376
++YVGN+ TE + F +G V +I+ RE G +AF+EF+ G
Sbjct: 7 SVYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAG 59
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 38.3 bits (85), Expect = 0.005
Identities = 22/66 (33%), Positives = 33/66 (50%)
Frame = +3
Query: 456 GNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 635
G Q + S+ + V +L E+ + LR+ F G + I RD T KG+AFV+F
Sbjct: 165 GRQIDRNRSDENTCRVTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTF 224
Query: 636 VKKADA 653
+ DA
Sbjct: 225 ESRDDA 230
>U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical
protein F25B5.7d protein.
Length = 374
Score = 37.9 bits (84), Expect = 0.006
Identities = 21/63 (33%), Positives = 33/63 (52%)
Frame = +3
Query: 465 PKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKK 644
PK + +FVG+L E++ L+E F+P G+I+ C L KG+AF+ +
Sbjct: 108 PKKKFTGRCRLFVGNLPNEVKETELKELFSPHGDIAEC-------YLSGKGFAFLRLDTR 160
Query: 645 ADA 653
A A
Sbjct: 161 AHA 163
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 37.9 bits (84), Expect = 0.006
Identities = 21/63 (33%), Positives = 33/63 (52%)
Frame = +3
Query: 465 PKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKK 644
PK + +FVG+L E++ L+E F+P G+I+ C L KG+AF+ +
Sbjct: 108 PKKKFTGRCRLFVGNLPNEVKETELKELFSPHGDIAEC-------YLSGKGFAFLRLDTR 160
Query: 645 ADA 653
A A
Sbjct: 161 AHA 163
>Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical
protein C17D12.2 protein.
Length = 514
Score = 36.3 bits (80), Expect = 0.019
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +3
Query: 495 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADA 653
+FVG + +E LR F FG+I I++D T KG AF+++ + A
Sbjct: 31 LFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKDKYTGMHKGCAFLTYCHRDSA 83
Score = 35.1 bits (77), Expect = 0.044
Identities = 22/63 (34%), Positives = 32/63 (50%)
Frame = +3
Query: 465 PKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKK 644
PK D + +F+G LS + + +R FA FGE+ ++R SKG AFV +
Sbjct: 117 PK-DKMDDKKLFIGMLSKQQSEDEVRALFATFGELDEVTVLRGADG-ASKGCAFVKYKHG 174
Query: 645 ADA 653
DA
Sbjct: 175 LDA 177
Score = 33.9 bits (74), Expect = 0.10
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +3
Query: 492 HIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 635
++F+ L E L + FAPFG I + ++ D T +SK + FVS+
Sbjct: 430 NLFIYHLPQEFGDAELIQMFAPFGHIVSAKVFVDRATNQSKCFGFVSY 477
>AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative
RNA-binding protein protein.
Length = 514
Score = 36.3 bits (80), Expect = 0.019
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +3
Query: 495 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADA 653
+FVG + +E LR F FG+I I++D T KG AF+++ + A
Sbjct: 31 LFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKDKYTGMHKGCAFLTYCHRDSA 83
Score = 35.1 bits (77), Expect = 0.044
Identities = 22/63 (34%), Positives = 32/63 (50%)
Frame = +3
Query: 465 PKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKK 644
PK D + +F+G LS + + +R FA FGE+ ++R SKG AFV +
Sbjct: 117 PK-DKMDDKKLFIGMLSKQQSEDEVRALFATFGELDEVTVLRGADG-ASKGCAFVKYKHG 174
Query: 645 ADA 653
DA
Sbjct: 175 LDA 177
Score = 33.9 bits (74), Expect = 0.10
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +3
Query: 492 HIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 635
++F+ L E L + FAPFG I + ++ D T +SK + FVS+
Sbjct: 430 NLFIYHLPQEFGDAELIQMFAPFGHIVSAKVFVDRATNQSKCFGFVSY 477
>Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical
protein C18D11.4 protein.
Length = 309
Score = 35.9 bits (79), Expect = 0.025
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +3
Query: 501 VGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADA 653
V +LS LR+ F FGEI+ C +V D + S+G+ F+ F DA
Sbjct: 80 VFNLSSYTTEKDLRDVFGEFGEINKCDLVYDRPSGNSRGFGFIYFNLIEDA 130
>AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3c protein.
Length = 435
Score = 35.1 bits (77), Expect = 0.044
Identities = 20/68 (29%), Positives = 36/68 (52%)
Frame = +3
Query: 450 SPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFV 629
+PGN+ T H+ V +L P+I+ ++R+ F FG I + D +++G+A +
Sbjct: 120 APGNKGPT------HVLVENLHPKIDEKMIRDIFESFGRIEKIDLEVD-SNRENRGFATI 172
Query: 630 SFVKKADA 653
+F DA
Sbjct: 173 TFRNADDA 180
Score = 30.7 bits (66), Expect = 0.94
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 537 LREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 635
L E F+ G + + RI+ D +T +SKG +V F
Sbjct: 41 LEEFFSAVGAVRDVRIITDSRTGRSKGICYVEF 73
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 35.1 bits (77), Expect = 0.044
Identities = 20/68 (29%), Positives = 36/68 (52%)
Frame = +3
Query: 450 SPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFV 629
+PGN+ T H+ V +L P+I+ ++R+ F FG I + D +++G+A +
Sbjct: 265 APGNKGPT------HVLVENLHPKIDEKMIRDIFESFGRIEKIDLEVD-SNRENRGFATI 317
Query: 630 SFVKKADA 653
+F DA
Sbjct: 318 TFRNADDA 325
Score = 30.7 bits (66), Expect = 0.94
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 537 LREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 635
L E F+ G + + RI+ D +T +SKG +V F
Sbjct: 186 LEEFFSAVGAVRDVRIITDSRTGRSKGICYVEF 218
>Z78019-5|CAB01455.1| 305|Caenorhabditis elegans Hypothetical
protein ZK863.7 protein.
Length = 305
Score = 34.7 bits (76), Expect = 0.058
Identities = 12/33 (36%), Positives = 24/33 (72%)
Frame = +3
Query: 495 IFVGDLSPEIETNILREAFAPFGEISNCRIVRD 593
+FVG+L +++N L++ F PF +++ C IV++
Sbjct: 5 LFVGNLPDNVDSNKLKQVFQPFCKVTECDIVKN 37
>U21302-2|AAA92287.1| 305|Caenorhabditis elegans RNP-1 protein.
Length = 305
Score = 34.7 bits (76), Expect = 0.058
Identities = 12/33 (36%), Positives = 24/33 (72%)
Frame = +3
Query: 495 IFVGDLSPEIETNILREAFAPFGEISNCRIVRD 593
+FVG+L +++N L++ F PF +++ C IV++
Sbjct: 5 LFVGNLPDNVDSNKLKQVFQPFCKVTECDIVKN 37
>Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical
protein R05H10.2 protein.
Length = 608
Score = 33.9 bits (74), Expect = 0.10
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Frame = +3
Query: 420 DKEMKVNWATSPGNQPKTDTS--NHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRD 593
D E +P Q KTD S +F+ +LS + + +++E + FG+I I +
Sbjct: 238 DDEEPAKKPKNPKAQLKTDESITEGKVVFLRNLSYDTKEELIKEELSKFGKIDLAIICKY 297
Query: 594 PQTLKSKGYAFVSFVKKADA 653
+ SKG AFV F +A
Sbjct: 298 KDSGHSKGTAFVHFSTPIEA 317
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 32.7 bits (71), Expect = 0.23
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = +3
Query: 495 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFV 638
+F+ +L + + L+ F +GE+S ++V D +T KG+A V FV
Sbjct: 281 LFLRNLPYATKEDDLQFLFKKYGEVSEVQVVIDKKTGACKGFAIVEFV 328
>Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical
protein R07E5.14 protein.
Length = 142
Score = 31.9 bits (69), Expect = 0.41
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = +3
Query: 495 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADA 653
+FV ++ E + + + F+ +G+I N + D +T KGYA V + + +A
Sbjct: 57 VFVTNIHEEATEDDVHDKFSEYGKIKNIHLNLDRRTGFLKGYALVEYETQKEA 109
>U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform b protein.
Length = 420
Score = 31.5 bits (68), Expect = 0.54
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +3
Query: 492 HIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 635
++F+ L + + L FAPFG I + ++ D T SK + FVS+
Sbjct: 336 NLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSY 383
>Z35663-4|CAA84724.1| 307|Caenorhabditis elegans Hypothetical
protein T04A8.6 protein.
Length = 307
Score = 30.7 bits (66), Expect = 0.94
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 549 FAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADA 653
F FG + R+ R+ +T KG+A+V F KA A
Sbjct: 52 FRQFGNVLRIRVARNRRTGNHKGWAYVGFDNKAVA 86
>U39997-3|AAK68389.1| 498|Caenorhabditis elegans Human daz (deleted
in azoospermia)homolog protein 1 protein.
Length = 498
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +3
Query: 489 HHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 635
+ IFVG LRE F F + + ++V+ +SKGY F++F
Sbjct: 66 NRIFVGGFPTSTTETELREHFEKFFAVKDVKMVKSLDG-QSKGYGFITF 113
>AB025253-1|BAA88577.1| 499|Caenorhabditis elegans DAZ-1 protein.
Length = 499
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +3
Query: 489 HHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 635
+ IFVG LRE F F + + ++V+ +SKGY F++F
Sbjct: 67 NRIFVGGFPTSTTETELREHFEKFFAVKDVKMVKSLDG-QSKGYGFITF 114
>U55370-7|AAA97998.2| 388|Caenorhabditis elegans Hypothetical
protein K03B4.1 protein.
Length = 388
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +2
Query: 209 DESH-PKTLYVGNLDPSVTEVFLCTLFGQ 292
D SH P T VGN P++T FL T FG+
Sbjct: 193 DSSHFPLTYLVGNSLPAITSPFLKTSFGE 221
>AC006605-3|AAK85442.1| 933|Caenorhabditis elegans Hypothetical
protein C07H6.4 protein.
Length = 933
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 209 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKII 322
D+ + +YV N+ SVTE L FG G + KI+
Sbjct: 195 DDPYTTNVYVSNIPHSVTEDDLLFTFGSFGPLAALKIL 232
>Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical
protein F26A3.2 protein.
Length = 154
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +2
Query: 227 TLYVGNLDPSVTEVFLCTLFGQIGDVK 307
TLYVGNL E + LFG+ GDV+
Sbjct: 38 TLYVGNLSYYTKEDQVYELFGRAGDVR 64
>U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical
protein EEED8.4 protein.
Length = 191
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +3
Query: 495 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 635
+F+G++ + E F G+I I +D T K K +A++ F
Sbjct: 57 VFIGNVDFNSTIEEIEEHFKGCGQIVKTTIPKDKFTKKQKNFAYIEF 103
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 28.7 bits (61), Expect = 3.8
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +2
Query: 215 SHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP-YAFLEFTCH 370
S + +YVGNL V E + +F + G +K I + G P +AF+EF H
Sbjct: 6 SEDQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDI--KSGRGPAFAFVEFEDH 56
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 28.7 bits (61), Expect = 3.8
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +2
Query: 215 SHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP-YAFLEFTCH 370
S + +YVGNL V E + +F + G +K I + G P +AF+EF H
Sbjct: 6 SEDQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDI--KSGRGPAFAFVEFEDH 56
>AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical
protein C44B12.7 protein.
Length = 389
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 7 PEK*TFHESTASFFXEVLSAVCDIFLSFIRYPTVISDEITR 129
P F T SF+ + + CD FLS I + ++ + ITR
Sbjct: 349 PSSNNFFSDTISFWNAITNN-CDTFLSPIHFENLVDNSITR 388
>U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform c protein.
Length = 118
Score = 27.5 bits (58), Expect = 8.8
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = +3
Query: 495 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADA 653
++VG L + + L E F FG I + R P G+AFV + DA
Sbjct: 5 VYVGGLPSDATSQELEEIFDRFGRIRKVWVARRP-----PGFAFVEYDDVRDA 52
>U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform b protein.
Length = 153
Score = 27.5 bits (58), Expect = 8.8
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = +3
Query: 495 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADA 653
++VG L + + L E F FG I + R P G+AFV + DA
Sbjct: 5 VYVGGLPSDATSQELEEIFDRFGRIRKVWVARRP-----PGFAFVEYDDVRDA 52
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 27.5 bits (58), Expect = 8.8
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = +3
Query: 495 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADA 653
++VG L + + L E F FG I + R P G+AFV + DA
Sbjct: 5 VYVGGLPSDATSQELEEIFDRFGRIRKVWVARRP-----PGFAFVEYDDVRDA 52
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,787,168
Number of Sequences: 27780
Number of extensions: 317467
Number of successful extensions: 899
Number of sequences better than 10.0: 85
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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