Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_J22
         (477 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    24   0.63 
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   1.9  
AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    21   4.4  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   7.7  

>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 24.2 bits (50), Expect = 0.63
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +3

Query: 138 TKTPKKLKIIDAYLFYIFLTAVIQFGYCCLVGTFPFNSFLS 260
           TK   K+ +I   +  +F+T  + F YC ++    FN++ S
Sbjct: 484 TKQQSKIHLI---VRSVFVTTYLMFDYCTVLRVQRFNNYQS 521



 Score = 20.6 bits (41), Expect = 7.7
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -3

Query: 439  QFIFYXMKLITTICNTRCANMKS 371
            QF+ Y + LIT + +  C  + S
Sbjct: 1241 QFLGYFIGLITFVMSQHCVELVS 1263


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -2

Query: 149 RSFRCVFLIQFW 114
           R+FRCVF++  W
Sbjct: 43  RTFRCVFVLDPW 54


>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 7/34 (20%), Positives = 21/34 (61%)
 Frame = +1

Query: 118 NCIKNTQRKLLRSLK*LMHTFSIFSLLRSYNSAT 219
           +C+++   K++++ + L H F + +L+ ++   T
Sbjct: 258 DCVRSEASKVVKNAQKLRHKFDLKTLVLNFPKFT 291


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 10/42 (23%), Positives = 18/42 (42%)
 Frame = -2

Query: 458 IEIIYETVYILSYEIDNNNMQHQMCKYEICKATFGTQPLELI 333
           +E++ E       + +NNN + +    + C   FG   L  I
Sbjct: 447 VEVVQEEAKKEESDSNNNNNKEEGNSCQYCNIAFGDAVLYTI 488


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,377
Number of Sequences: 336
Number of extensions: 2084
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 11141978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)