Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_J22
(477 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0783 + 19607871-19607951,19608027-19608074,19608719-196088... 100 5e-22
10_07_0176 - 13826764-13827064,13827271-13827377,13827474-138278... 31 0.48
04_04_0996 + 29990255-29990425,29990797-29990841,29991024-299910... 28 3.4
08_01_1077 - 11027732-11027839,11028346-11028477,11029722-110298... 28 4.5
06_03_0570 - 22363197-22363588,22363755-22366782 27 7.8
02_05_0161 + 26384079-26384086,26386173-26386226,26386376-263864... 27 7.8
01_05_0340 - 21139885-21139978,21140169-21140272,21140379-211405... 27 7.8
01_01_0565 - 4159946-4160042,4160140-4160243,4160378-4160533,416... 27 7.8
>04_03_0783 +
19607871-19607951,19608027-19608074,19608719-19608806,
19608887-19608930,19609016-19609099
Length = 114
Score = 100 bits (240), Expect = 5e-22
Identities = 53/103 (51%), Positives = 66/103 (64%)
Frame = +3
Query: 93 SSLTAVIPKLYQEYTTKTPKKLKIIDAYLFYIFLTAVIQFGYCCLVGTFPFNSFLSGFIS 272
S +I L + Y TP LKIID Y+ + TA+IQ Y +VG+FPFNSFLSG +S
Sbjct: 6 SDAKLLIQSLGKAYAA-TPTNLKIIDLYVVFAVATALIQVVYMGIVGSFPFNSFLSGVLS 64
Query: 273 TVSCFVLGVCLRLQVNPXNKNEFQGLSAERGFADFIFAHLVLH 401
+ VL VCLR+QVN NK EF+ L ER FADF+ +LVLH
Sbjct: 65 CIGTAVLAVCLRIQVNKDNK-EFKDLPPERAFADFVLCNLVLH 106
>10_07_0176 - 13826764-13827064,13827271-13827377,13827474-13827836,
13827912-13828079,13828153-13828374,13828784-13829023,
13829640-13829719,13829853-13830018,13830720-13830783,
13830861-13830962,13831085-13831227,13831370-13831474,
13831551-13831706,13832125-13832241,13832315-13832392,
13832466-13832550,13833334-13833455,13833546-13833611,
13835190-13835284,13835427-13835523,13835873-13835983,
13836083-13836164,13836292-13836353,13836620-13836685,
13838002-13838232
Length = 1142
Score = 31.1 bits (67), Expect = 0.48
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Frame = +3
Query: 93 SSLTAVIPKLYQEYTTKTPKKLKIIDAYLFYIFLTAVIQFGYCCLVGTFPFNSF--LSGF 266
+SL+ PKLYQE T K ++I + F+ F +++ + + + S + G
Sbjct: 890 ASLSKKYPKLYQEGIRNTFFKWRVIAVWAFFAFYQSIVFYYFTAAASRYGHGSSGKILGL 949
Query: 267 --ISTV--SCFVLGVCLRL 311
+ST+ +C V+ V LRL
Sbjct: 950 WDVSTMAFTCVVVTVNLRL 968
>04_04_0996 +
29990255-29990425,29990797-29990841,29991024-29991098,
29991481-29991691,29992057-29992442,29993202-29993425,
29993529-29993664,29993699-29993761,29993842-29994021
Length = 496
Score = 28.3 bits (60), Expect = 3.4
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = -3
Query: 286 KQLTVDIKPLKKELNGKVPTRQQ*PNCMTAVRKI*K-RYASIILSFLGVFVVY 131
K TV I+ +KKEL G++ + PNC KI + ++ II +F V++
Sbjct: 384 KNPTVLIEEVKKELEGELSRQHPCPNCRQPNPKIVEDNFSHIICTFHPFAVIW 436
>08_01_1077 -
11027732-11027839,11028346-11028477,11029722-11029802,
11029911-11030063,11030167-11030281,11030282-11030927,
11031409-11031613,11031696-11031758
Length = 500
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -3
Query: 328 FXGLTCSRRHTPRTKQLTVDIKPLKKELNGK 236
F L C RH+P K+LT+ ++ +++ NG+
Sbjct: 373 FSRLFCLLRHSPELKELTLKLEVERQDHNGE 403
>06_03_0570 - 22363197-22363588,22363755-22366782
Length = 1139
Score = 27.1 bits (57), Expect = 7.8
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Frame = -3
Query: 388 CANMKSAKPRSALNPWNSFL----FXGLTCSRRHTPRTKQLTVDIKPLKKELNGKVP 230
C + + +L WN L + G+TC +RH R L ++ +LNG +P
Sbjct: 47 CLKSRLSNNARSLASWNESLQFCTWPGITCGKRHESRVTALHLE----SLDLNGHLP 99
>02_05_0161 +
26384079-26384086,26386173-26386226,26386376-26386448,
26386775-26386822,26386906-26386953,26387990-26388061,
26388156-26388311,26388428-26388531,26388628-26388724
Length = 219
Score = 27.1 bits (57), Expect = 7.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 174 YLFYIFLTAVIQFGYCCLVGTFPFNSFLSGFISTV 278
YLF + L G CL+ F +S+L +IST+
Sbjct: 23 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTI 57
>01_05_0340 -
21139885-21139978,21140169-21140272,21140379-21140534,
21140622-21140693,21140782-21140829,21140923-21140970,
21141807-21141879,21142333-21142346
Length = 202
Score = 27.1 bits (57), Expect = 7.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 174 YLFYIFLTAVIQFGYCCLVGTFPFNSFLSGFISTV 278
YLF + L G CL+ F +S+L +IST+
Sbjct: 7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTI 41
>01_01_0565 -
4159946-4160042,4160140-4160243,4160378-4160533,
4160629-4160700,4161796-4161843,4161923-4161970,
4162295-4162367,4163188-4163201
Length = 203
Score = 27.1 bits (57), Expect = 7.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 174 YLFYIFLTAVIQFGYCCLVGTFPFNSFLSGFISTV 278
YLF + L G CL+ F +S+L +IST+
Sbjct: 7 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTI 41
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,855,270
Number of Sequences: 37544
Number of extensions: 174842
Number of successful extensions: 394
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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