Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_J22
         (477 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X89080-1|CAA61451.1|  113|Caenorhabditis elegans dad-1 protein.       138   2e-33
AF039713-4|AAB96727.1|  113|Caenorhabditis elegans Dad (defender...   138   2e-33
Z79600-9|CAJ85761.1|  110|Caenorhabditis elegans Hypothetical pr...    29   1.3  
Z79600-8|CAJ85760.1|  147|Caenorhabditis elegans Hypothetical pr...    29   1.3  
U40800-2|AAA81489.2|  137|Caenorhabditis elegans Hypothetical pr...    29   2.3  
U40028-10|AAA81121.3|  363|Caenorhabditis elegans Serpentine rec...    28   3.0  
AC025715-3|AAU87815.1|  534|Caenorhabditis elegans Hypothetical ...    28   3.0  
AF045642-7|AAC02583.1|  592|Caenorhabditis elegans Hypothetical ...    27   5.3  
Z68009-5|CAA92007.1|  208|Caenorhabditis elegans Hypothetical pr...    27   7.0  
AL110477-5|CAB54329.1|  314|Caenorhabditis elegans Hypothetical ...    27   7.0  
Z69884-8|CAA93752.2|  582|Caenorhabditis elegans Hypothetical pr...    27   9.2  
U41279-3|AAK31422.1|  210|Caenorhabditis elegans Helix loop heli...    27   9.2  
U39666-2|AAA80411.2|  835|Caenorhabditis elegans Oligopeptide tr...    27   9.2  
AY090484-1|AAM11893.1|  582|Caenorhabditis elegans low-affinity ...    27   9.2  
AF000418-1|AAC39119.1|  796|Caenorhabditis elegans low-affinity ...    27   9.2  

>X89080-1|CAA61451.1|  113|Caenorhabditis elegans dad-1 protein.
          Length = 113

 Score =  138 bits (334), Expect = 2e-33
 Identities = 63/103 (61%), Positives = 77/103 (74%)
 Frame = +3

Query: 93  SSLTAVIPKLYQEYTTKTPKKLKIIDAYLFYIFLTAVIQFGYCCLVGTFPFNSFLSGFIS 272
           + +  V+ KL+ +Y   T  KLKIIDAY+ YI  T + QF YC LVGTFPFNSFLSGFIS
Sbjct: 3   AQVVPVLSKLFDDYQKTTSSKLKIIDAYMTYILFTGIFQFIYCLLVGTFPFNSFLSGFIS 62

Query: 273 TVSCFVLGVCLRLQVNPXNKNEFQGLSAERGFADFIFAHLVLH 401
           TV+ FVL  CLR+QVN  N++EF  +S ER FADFIFA+L+LH
Sbjct: 63  TVTSFVLASCLRMQVNQENRSEFTAVSTERAFADFIFANLILH 105


>AF039713-4|AAB96727.1|  113|Caenorhabditis elegans Dad (defender
           against apoptoticdeath) homolog protein 1 protein.
          Length = 113

 Score =  138 bits (334), Expect = 2e-33
 Identities = 63/103 (61%), Positives = 77/103 (74%)
 Frame = +3

Query: 93  SSLTAVIPKLYQEYTTKTPKKLKIIDAYLFYIFLTAVIQFGYCCLVGTFPFNSFLSGFIS 272
           + +  V+ KL+ +Y   T  KLKIIDAY+ YI  T + QF YC LVGTFPFNSFLSGFIS
Sbjct: 3   AQVVPVLSKLFDDYQKTTSSKLKIIDAYMTYILFTGIFQFIYCLLVGTFPFNSFLSGFIS 62

Query: 273 TVSCFVLGVCLRLQVNPXNKNEFQGLSAERGFADFIFAHLVLH 401
           TV+ FVL  CLR+QVN  N++EF  +S ER FADFIFA+L+LH
Sbjct: 63  TVTSFVLASCLRMQVNQENRSEFTAVSTERAFADFIFANLILH 105


>Z79600-9|CAJ85761.1|  110|Caenorhabditis elegans Hypothetical
           protein F59C6.14b protein.
          Length = 110

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 150 KKLKIIDAYLFYIFLTAVIQFGYCCLVGTFPFNSFLSGFIS 272
           K +  IDA +F   +T ++   YC   G F    +L GF+S
Sbjct: 70  KMIVFIDA-VFSAIITLMLLIAYCFFAGGFNGKQYLDGFVS 109


>Z79600-8|CAJ85760.1|  147|Caenorhabditis elegans Hypothetical
           protein F59C6.14a protein.
          Length = 147

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 150 KKLKIIDAYLFYIFLTAVIQFGYCCLVGTFPFNSFLSGFIS 272
           K +  IDA +F   +T ++   YC   G F    +L GF+S
Sbjct: 107 KMIVFIDA-VFSAIITLMLLIAYCFFAGGFNGKQYLDGFVS 146


>U40800-2|AAA81489.2|  137|Caenorhabditis elegans Hypothetical
           protein D2096.5 protein.
          Length = 137

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = +3

Query: 156 LKIIDAYLFYIFLTAVIQFGYCCLVGTFPFNSFLSGFISTVSCFV 290
           + ++  ++F +F + V       LV TF FN FLS  +STV  FV
Sbjct: 6   VSLLSVFIFLLFSSEVE-----ALVTTFHFNGFLSCGLSTVDFFV 45


>U40028-10|AAA81121.3|  363|Caenorhabditis elegans Serpentine
           receptor, class e (epsilon)protein 40 protein.
          Length = 363

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 8/47 (17%)
 Frame = +3

Query: 117 KLYQEYTTKTPKKLKIID------AYLFY--IFLTAVIQFGYCCLVG 233
           K+Y E+TT T  ++ II+       YLF   + LT  + F   C++G
Sbjct: 102 KIYSEFTTNTTSEMIIIEKTLWDVPYLFIGSVMLTHYMAFSVTCMIG 148


>AC025715-3|AAU87815.1|  534|Caenorhabditis elegans Hypothetical
           protein Y38F2AR.5 protein.
          Length = 534

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 19/75 (25%), Positives = 30/75 (40%)
 Frame = -3

Query: 400 CNTRCANMKSAKPRSALNPWNSFLFXGLTCSRRHTPRTKQLTVDIKPLKKELNGKVPTRQ 221
           C+T C  +   + +S    WN+F    L  S      +  L V+  P+KK      P   
Sbjct: 304 CSTDCKRIVEQRVKSVHKDWNNFSRLSLADSDIVRTSSNPLKVEYPPIKKFGGTNAPKSN 363

Query: 220 Q*PNCMTAVRKI*KR 176
           +  N     R+I K+
Sbjct: 364 R--NTQKTARQIPKK 376


>AF045642-7|AAC02583.1|  592|Caenorhabditis elegans Hypothetical
           protein C17H12.4 protein.
          Length = 592

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = +3

Query: 84  NKMSSLTAVIPKLYQEYTTKTPKKLKIIDAYL-FYIFLTAVIQFGYCCLVGTFPFNSFL 257
           N+  S+   + + Y+E +         I   L F IFLT  + FG CC VG    N ++
Sbjct: 519 NQKISIRKPVVRFYEESSKYHQYSYMTISILLIFTIFLTGYL-FGRCCCVGNQDRNLYI 576


>Z68009-5|CAA92007.1|  208|Caenorhabditis elegans Hypothetical
           protein R09A8.5 protein.
          Length = 208

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +3

Query: 108 VIPKLYQEYTTKTPKKLKIIDAYLFYIFLTAVI--QFGYCC 224
           V+P L+ +   KT K++  +D +L +IF   +I    GY C
Sbjct: 123 VLPALHYDNEHKTVKQMVKLDLHLIFIFFFHLILAAIGYRC 163


>AL110477-5|CAB54329.1|  314|Caenorhabditis elegans Hypothetical
           protein Y113G7B.7 protein.
          Length = 314

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 248 IKWESADKATVAELYDRSKENIEKVCINYFK 156
           I +   D+    +LY+RS++ IEK  +N  K
Sbjct: 83  ISYTDRDEGCTVKLYNRSEKYIEKTALNAMK 113


>Z69884-8|CAA93752.2|  582|Caenorhabditis elegans Hypothetical
           protein F31F6.6 protein.
          Length = 582

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
 Frame = +3

Query: 108 VIPKLYQEYTTKTPKKLKIIDAYLFYIFLTAVIQFGYCCLVGTFPFNS--FLSGFISTVS 281
           VI  ++     +  + L+I D   F + +T    F +   V T P N+  F SG++    
Sbjct: 462 VIASIFIPIVAELARSLEI-DPLNFMLPVTISASFAFLLPVATPP-NAIVFSSGYLKVFD 519

Query: 282 CFVLGVCLRL 311
            FV G+C+ L
Sbjct: 520 MFVSGLCVTL 529


>U41279-3|AAK31422.1|  210|Caenorhabditis elegans Helix loop helix
           protein 26 protein.
          Length = 210

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 200 GHTIRLLLPCRHFPI*FFLKWFYIYSKLL 286
           G +I   +PC  FPI  FL  F +YS L+
Sbjct: 137 GKSITCTVPCLPFPILPFLPVFPVYSPLV 165


>U39666-2|AAA80411.2|  835|Caenorhabditis elegans Oligopeptide
           transporter protein 2 protein.
          Length = 835

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 231 GTFPFNSFLSGFISTVSCFVLGVCLRLQVNPXNKN 335
           G+ P   +L  +++T  C +   CL LQ    NKN
Sbjct: 271 GSTPKEHWLLHYLTTHDCALDAKCLELQAEKRNKN 305


>AY090484-1|AAM11893.1|  582|Caenorhabditis elegans low-affinity
           dicarboxylate transporterINDY1 protein.
          Length = 582

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
 Frame = +3

Query: 108 VIPKLYQEYTTKTPKKLKIIDAYLFYIFLTAVIQFGYCCLVGTFPFNS--FLSGFISTVS 281
           VI  ++     +  + L+I D   F + +T    F +   V T P N+  F SG++    
Sbjct: 462 VIASIFIPIVAELARSLEI-DPLNFMLPVTISASFAFLLPVATPP-NAIVFSSGYLKVFD 519

Query: 282 CFVLGVCLRL 311
            FV G+C+ L
Sbjct: 520 MFVSGLCVTL 529


>AF000418-1|AAC39119.1|  796|Caenorhabditis elegans low-affinity
           peptide transporter protein.
          Length = 796

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 231 GTFPFNSFLSGFISTVSCFVLGVCLRLQVNPXNKN 335
           G+ P   +L  +++T  C +   CL LQ    NKN
Sbjct: 232 GSTPKEHWLLHYLTTHDCALDAKCLELQAEKRNKN 266


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,439,953
Number of Sequences: 27780
Number of extensions: 184333
Number of successful extensions: 565
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)