Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_J21
(515 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A... 108 6e-25
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub... 103 1e-23
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2... 103 1e-23
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|... 42 7e-05
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc... 40 2e-04
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S... 40 3e-04
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 31 0.10
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 29 0.41
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 27 1.3
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 27 2.2
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 26 2.9
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa... 26 3.8
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 25 5.1
SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 5.1
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 5.1
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 25 5.1
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 6.7
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos... 25 6.7
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 25 8.9
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe... 25 8.9
>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 108 bits (259), Expect = 6e-25
Identities = 52/106 (49%), Positives = 72/106 (67%)
Frame = +1
Query: 100 YLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMP 279
YLL +GGK +P+A+D+E +LS+VGIEA++E+++ +I ELNGKD+++LIAAG EKL+++P
Sbjct: 7 YLLLTVGGKDSPSASDIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNEKLATVP 66
Query: 280 VGGGXXXXXXXXXXXXXXXEEXKEDKKXXXKEXSESDDDMGFGLFD 417
GG E E K KE ESD+DMGFGLFD
Sbjct: 67 TGGAASAAPAAAAGGAAPAAE--EAAKEEAKEEEESDEDMGFGLFD 110
>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 103 bits (248), Expect = 1e-23
Identities = 51/106 (48%), Positives = 72/106 (67%)
Frame = +1
Query: 100 YLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMP 279
YLL +GGK +P+A+D+E +LS+VGIEA+AE+++ +I+ELNGK++E+LIAAG EKLS++P
Sbjct: 7 YLLLTVGGKQSPSASDIESVLSTVGIEAEAERVESLISELNGKNIEELIAAGNEKLSTVP 66
Query: 280 VGGGXXXXXXXXXXXXXXXEEXKEDKKXXXKEXSESDDDMGFGLFD 417
G +E K+ E ESD+DMGFGLFD
Sbjct: 67 SAGAVATPAAGGAAGAEATSAAEEAKEEEAAE--ESDEDMGFGLFD 110
>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 110
Score = 103 bits (248), Expect = 1e-23
Identities = 50/106 (47%), Positives = 72/106 (67%)
Frame = +1
Query: 100 YLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMP 279
YLL +GGK +P+A+D+E +LS+VGIE+++E+++ +I EL+GKD+++LIAAG EKL+++P
Sbjct: 7 YLLLTVGGKNSPSASDIESVLSTVGIESESERVEALIKELDGKDIDELIAAGNEKLATVP 66
Query: 280 VGGGXXXXXXXXXXXXXXXEEXKEDKKXXXKEXSESDDDMGFGLFD 417
GG E E K KE ESD+DMGFGLFD
Sbjct: 67 SGGAAAAAAPAAAGGAAPAAE--EAAKEEAKEEEESDEDMGFGLFD 110
>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 109
Score = 41.5 bits (93), Expect = 7e-05
Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +1
Query: 217 LNGKDVEQLIA-AGREKLSSMPVGGGXXXXXXXXXXXXXXXEEXKEDKKXXXKEXSESDD 393
L GKD+++L+ G +S P G E +E+KK KE ESD+
Sbjct: 50 LEGKDLKELLLNIGSAGAASAPTAAGAGAAAPA--------EAAEEEKKEEAKEEEESDE 101
Query: 394 DMGFGLFD 417
DMGFGLFD
Sbjct: 102 DMGFGLFD 109
>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 109
Score = 39.9 bits (89), Expect = 2e-04
Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Frame = +1
Query: 151 EKILS-SVGIEADAEKLKKVI--TELNGKDVEQLIAAGREKLSSMPVGGGXXXXXXXXXX 321
+K+LS + D E + I L GKD+++L+ + PV GG
Sbjct: 25 DKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLLNIGSGAGAAPVAGGAAAPAAADG- 83
Query: 322 XXXXXEEXKEDKKXXXKEXSESDDDMGFGLFD 417
E ++K KE ESD+DMGFGLFD
Sbjct: 84 ------EAPAEEKEEAKEEEESDEDMGFGLFD 109
>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 39.5 bits (88), Expect = 3e-04
Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Frame = +1
Query: 151 EKILS-SVGIEADAEKLKKVI--TELNGKDVEQLIAAGREKLSSMPVGGGXXXXXXXXXX 321
+K+LS + D E + I L GKD+++L+ ++ P GG
Sbjct: 25 DKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLL-NIGSAAAAPAAGGAGAPAAAAGG 83
Query: 322 XXXXXEEXKEDKKXXXKEXSESDDDMGFGLFD 417
E E++K KE ESD+DMGFGLFD
Sbjct: 84 -----EAAAEEQKEEAKEEEESDEDMGFGLFD 110
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 31.1 bits (67), Expect = 0.10
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +1
Query: 370 KEXSESDDDMGFGLFD 417
+E ESD+DMGFGLFD
Sbjct: 297 EEEEESDEDMGFGLFD 312
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 29.1 bits (62), Expect = 0.41
Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Frame = -1
Query: 218 SSVITFLSFSASASIP--TELRIFSTSAAAGVVLPPSTAS 105
SSV T LS SAS+SIP + STS ++ V+P S++S
Sbjct: 8 SSVDTSLSSSASSSIPASSSSAAASTSLSSSSVIPSSSSS 47
Score = 25.0 bits (52), Expect = 6.7
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = -1
Query: 266 SFSRPAAISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAA 135
SF+ PA+ S TSL SS S SAS + + + S+S+A+
Sbjct: 70 SFTSPASSSFITSLVSSSSQQSSSSSASLTSSSSATLTSSSSAS 113
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 27.5 bits (58), Expect = 1.3
Identities = 16/53 (30%), Positives = 29/53 (54%)
Frame = -1
Query: 266 SFSRPAAISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTA 108
SF P+A + S P+SS+ +F + SA+++ P+ + S A P +T+
Sbjct: 451 SFKAPSATTDKPSPPVSSIFSFNAPSAASTKPSPAVSSTFSFNAPTTTPSATS 503
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 26.6 bits (56), Expect = 2.2
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = -1
Query: 248 AISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTAS 105
++S S+ L S++ T S +AS+PT I S S P+T+S
Sbjct: 79 SLSSSSILSNSTISTSSSTPITASVPTSSSILSNSTIPTTSPVPTTSS 126
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 26.2 bits (55), Expect = 2.9
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 148 VEKILSSVGIEADAEKLKKVITELNG 225
V++I VG+E D+E K + E+ G
Sbjct: 1742 VDEIFGEVGVEKDSEDYKSNVKEIKG 1767
>SPAC19E9.02 |fin1||serine/threonine protein kinase
Fin1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 25.8 bits (54), Expect = 3.8
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -1
Query: 233 TSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTAS 105
+ L + S T +S S+ S+PT+ + T + + V PPS S
Sbjct: 526 SKLSVESDETAVSASSGESVPTDSTLTDTKSKSVFVHPPSPQS 568
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 25.4 bits (53), Expect = 5.1
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Frame = -1
Query: 290 PPPTGIDDSFSRPAAISCSTSLPLSSVITFLS----FSASASIPTELRIFSTSAAAGVVL 123
PPP SFS I+ ++ +P SS T + ++ S+ +P+ + I S S ++ VL
Sbjct: 190 PPPASSTSSFS---TITNTSMIPSSSSFTTTTGSPYYNTSSFLPSSV-ISSASLSSSSVL 245
Query: 122 PPS 114
P S
Sbjct: 246 PTS 248
>SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 25.4 bits (53), Expect = 5.1
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +2
Query: 416 TKLYKSTRRWSLFQFMF 466
TKL K TRR SLF+F F
Sbjct: 317 TKLMKYTRRKSLFRFPF 333
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.4 bits (53), Expect = 5.1
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 6/79 (7%)
Frame = -1
Query: 287 PPTGIDDSFSRPAA------ISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVV 126
PPTG S S P + STS+P+ T + + S+ +PT STS
Sbjct: 179 PPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTT----STSCTTSTS 234
Query: 125 LPPSTASK*RGHVTHFLSP 69
+P +S +T + P
Sbjct: 235 IPTGGSSSLSTPITPTVPP 253
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 25.4 bits (53), Expect = 5.1
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = -1
Query: 233 TSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTA 108
T LP ++V T SFS SAS T +++ +V PPST+
Sbjct: 37 TPLPSANVTT-TSFS-SASTETSTHSVTSTNITSIVPPPSTS 76
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 6.7
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = -1
Query: 284 PTGIDDSFSRPAAISCSTSLPLSS---VITFLSFSASASIPTELRIFSTSAAAGVVLPPS 114
PT S+ +++ S+S P SS +T S S S+ T STS++ S
Sbjct: 202 PTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSS 261
Query: 113 TAS 105
TAS
Sbjct: 262 TAS 264
>SPAC2E1P3.05c |||fungal cellulose binding domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 25.0 bits (52), Expect = 6.7
Identities = 19/52 (36%), Positives = 30/52 (57%)
Frame = -1
Query: 260 SRPAAISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTAS 105
S P+A+S +TS+P S+ + +S S S S T L S+S + V+ +T S
Sbjct: 139 SSPSAVSSTTSIP--SISSTISSSVSTSSFTSL---SSSGFSTVLSSTNTTS 185
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 24.6 bits (51), Expect = 8.9
Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Frame = -1
Query: 260 SRPAAISCSTSLPLSSVITFLSFSASASIPT---ELRIFSTSAAAGVVLPPSTASK*RGH 90
S+ +S ST + L LSF S E+ S S V L P +A K GH
Sbjct: 391 SKAKMMSISTPMALGMNRGVLSFERSIEKRKNDYEVTGQSLSFVDDVSLTPDSAPKYAGH 450
Query: 89 VTHFLSPN*HETCN 48
V L+ ETC+
Sbjct: 451 VVAVLNRPSGETCS 464
>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 310
Score = 24.6 bits (51), Expect = 8.9
Identities = 10/32 (31%), Positives = 14/32 (43%)
Frame = -1
Query: 170 TELRIFSTSAAAGVVLPPSTASK*RGHVTHFL 75
T + S G VLPP + + GH F+
Sbjct: 75 TATHVHGASGFEGAVLPPPSRKENEGHAVDFI 106
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,521,948
Number of Sequences: 5004
Number of extensions: 22627
Number of successful extensions: 105
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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