Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_J21
(515 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132865-1|CAB60595.1| 110|Caenorhabditis elegans Hypothetical ... 88 3e-18
U97194-7|AAB52450.2| 107|Caenorhabditis elegans Hypothetical pr... 87 7e-18
U89307-1|AAB48625.1| 111|Caenorhabditis elegans ribosomal prote... 33 0.092
AC087079-6|AAK27864.1| 111|Caenorhabditis elegans Ribosomal pro... 33 0.12
Z79754-9|CAB02098.1| 312|Caenorhabditis elegans Hypothetical pr... 32 0.21
Z70752-5|CAA94758.1| 901|Caenorhabditis elegans Hypothetical pr... 32 0.28
Z70750-16|CAA94750.1| 901|Caenorhabditis elegans Hypothetical p... 32 0.28
Z83228-10|CAB05732.2| 585|Caenorhabditis elegans Hypothetical p... 27 8.0
Z83228-1|CAC70093.1| 568|Caenorhabditis elegans Hypothetical pr... 27 8.0
X83887-1|CAA58764.1| 498|Caenorhabditis elegans alpha-1 subunit... 27 8.0
AY523511-1|AAR98633.1| 498|Caenorhabditis elegans acetylcholine... 27 8.0
AF110415-1|AAF21932.1| 568|Caenorhabditis elegans organic catio... 27 8.0
AF022973-7|AAN84815.1| 480|Caenorhabditis elegans Acetylcholine... 27 8.0
AF022973-6|AAC25796.1| 498|Caenorhabditis elegans Acetylcholine... 27 8.0
>AL132865-1|CAB60595.1| 110|Caenorhabditis elegans Hypothetical
protein Y62E10A.1 protein.
Length = 110
Score = 88.2 bits (209), Expect = 3e-18
Identities = 50/106 (47%), Positives = 60/106 (56%)
Frame = +1
Query: 100 YLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMP 279
YLLAVLGG P D++ ILS+VG++ADAE K V++ L GK VE+LIA G L S+
Sbjct: 7 YLLAVLGGNANPKVDDLKNILSAVGVDADAETAKLVVSRLAGKTVEELIAEGSAGLVSVS 66
Query: 280 VGGGXXXXXXXXXXXXXXXEEXKEDKKXXXKEXSESDDDMGFGLFD 417
G + K KK KE ESDDDMGFGLFD
Sbjct: 67 GGAAPAAAAAPAAGGAAPAADSKPAKKEEPKE--ESDDDMGFGLFD 110
>U97194-7|AAB52450.2| 107|Caenorhabditis elegans Hypothetical
protein C37A2.7 protein.
Length = 107
Score = 87.0 bits (206), Expect = 7e-18
Identities = 47/106 (44%), Positives = 62/106 (58%)
Frame = +1
Query: 100 YLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMP 279
YLLA LGG +P+A DV K+L + G++ D E V+ L GK + ++IA G+ KLSS+P
Sbjct: 7 YLLATLGGNASPSAQDVLKVLEAGGLDCDMENANSVVDALKGKTISEVIAQGKVKLSSVP 66
Query: 280 VGGGXXXXXXXXXXXXXXXEEXKEDKKXXXKEXSESDDDMGFGLFD 417
GG EE K+++ KE ESDDDMGFGLFD
Sbjct: 67 SGGSAPAAAAPSGGAAPKAEEKKKEE---PKE--ESDDDMGFGLFD 107
>U89307-1|AAB48625.1| 111|Caenorhabditis elegans ribosomal protein
P1 homolog protein.
Length = 111
Score = 33.5 bits (73), Expect = 0.092
Identities = 25/90 (27%), Positives = 34/90 (37%)
Frame = +1
Query: 148 VEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGGGXXXXXXXXXXXX 327
+ +L + +E + L G DV+ LI + S P
Sbjct: 28 IATLLKAANVEFEPNWPGLFAKALEGVDVKNLITSVSSGAGSGPAPAAAAAAPAAGGAAP 87
Query: 328 XXXEEXKEDKKXXXKEXSESDDDMGFGLFD 417
+ KE+ K ESDDDMGFGLFD
Sbjct: 88 AAETKKKEEPK------EESDDDMGFGLFD 111
>AC087079-6|AAK27864.1| 111|Caenorhabditis elegans Ribosomal
protein, acidic protein 1 protein.
Length = 111
Score = 33.1 bits (72), Expect = 0.12
Identities = 23/67 (34%), Positives = 27/67 (40%)
Frame = +1
Query: 217 LNGKDVEQLIAAGREKLSSMPVGGGXXXXXXXXXXXXXXXEEXKEDKKXXXKEXSESDDD 396
L G DV+ LI + S P + KE+ K ESDDD
Sbjct: 51 LEGVDVKNLITSVSSGAGSGPAPAAAAAAPAAGGAAPAAETKKKEEPK------EESDDD 104
Query: 397 MGFGLFD 417
MGFGLFD
Sbjct: 105 MGFGLFD 111
>Z79754-9|CAB02098.1| 312|Caenorhabditis elegans Hypothetical
protein F25H2.10 protein.
Length = 312
Score = 32.3 bits (70), Expect = 0.21
Identities = 16/21 (76%), Positives = 16/21 (76%)
Frame = +1
Query: 355 KKXXXKEXSESDDDMGFGLFD 417
KK KE ESDDDMGFGLFD
Sbjct: 294 KKEEPKE--ESDDDMGFGLFD 312
>Z70752-5|CAA94758.1| 901|Caenorhabditis elegans Hypothetical
protein F25B3.1 protein.
Length = 901
Score = 31.9 bits (69), Expect = 0.28
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = +1
Query: 127 TTPAAADVEKILSSVGIEADAEKLKKVITEL-NGKDVEQLI 246
+TPA+A +I + GI EK+ +ITE+ N KD+E+ +
Sbjct: 444 STPASASDHRISRTFGINESEEKVVAMITEIRNQKDLEEAV 484
>Z70750-16|CAA94750.1| 901|Caenorhabditis elegans Hypothetical
protein F25B3.1 protein.
Length = 901
Score = 31.9 bits (69), Expect = 0.28
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = +1
Query: 127 TTPAAADVEKILSSVGIEADAEKLKKVITEL-NGKDVEQLI 246
+TPA+A +I + GI EK+ +ITE+ N KD+E+ +
Sbjct: 444 STPASASDHRISRTFGINESEEKVVAMITEIRNQKDLEEAV 484
>Z83228-10|CAB05732.2| 585|Caenorhabditis elegans Hypothetical
protein F52F12.1a protein.
Length = 585
Score = 27.1 bits (57), Expect = 8.0
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 3/30 (10%)
Frame = +1
Query: 166 SVGIEADAEKLKKVITELNGK---DVEQLI 246
SVG ADA+K K I ++NGK DV++L+
Sbjct: 297 SVGKWADAKKQLKKIAKMNGKSNVDVDELV 326
>Z83228-1|CAC70093.1| 568|Caenorhabditis elegans Hypothetical
protein F52F12.1b protein.
Length = 568
Score = 27.1 bits (57), Expect = 8.0
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 3/30 (10%)
Frame = +1
Query: 166 SVGIEADAEKLKKVITELNGK---DVEQLI 246
SVG ADA+K K I ++NGK DV++L+
Sbjct: 280 SVGKWADAKKQLKKIAKMNGKSNVDVDELV 309
>X83887-1|CAA58764.1| 498|Caenorhabditis elegans alpha-1 subunit of
nicotinic acetylcholinereceptor protein.
Length = 498
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +2
Query: 47 HYTFRVN*DLKNALRGRAIYWLCWVARLRQLPLTLRRSSAPSV 175
HY D+ R +YW+ W+ R+++ L +S PS+
Sbjct: 317 HYRTPETHDMGPWTRNLLLYWIPWILRMKRPGHNLTYASLPSL 359
>AY523511-1|AAR98633.1| 498|Caenorhabditis elegans acetylcholine
receptor (57.1 kD)alternative variant 1 protein.
Length = 498
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +2
Query: 47 HYTFRVN*DLKNALRGRAIYWLCWVARLRQLPLTLRRSSAPSV 175
HY D+ R +YW+ W+ R+++ L +S PS+
Sbjct: 317 HYRTPETHDMGPWTRNLLLYWIPWILRMKRPGHNLTYASLPSL 359
>AF110415-1|AAF21932.1| 568|Caenorhabditis elegans organic cation
transporter 1 protein.
Length = 568
Score = 27.1 bits (57), Expect = 8.0
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 3/30 (10%)
Frame = +1
Query: 166 SVGIEADAEKLKKVITELNGK---DVEQLI 246
SVG ADA+K K I ++NGK DV++L+
Sbjct: 280 SVGKWADAKKQLKKIAKMNGKSNVDVDELV 309
>AF022973-7|AAN84815.1| 480|Caenorhabditis elegans Acetylcholine
receptor protein16, isoform b protein.
Length = 480
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +2
Query: 47 HYTFRVN*DLKNALRGRAIYWLCWVARLRQLPLTLRRSSAPSV 175
HY D+ R +YW+ W+ R+++ L +S PS+
Sbjct: 317 HYRTPETHDMGPWTRNLLLYWIPWILRMKRPGHNLTYASLPSL 359
>AF022973-6|AAC25796.1| 498|Caenorhabditis elegans Acetylcholine
receptor protein16, isoform a protein.
Length = 498
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +2
Query: 47 HYTFRVN*DLKNALRGRAIYWLCWVARLRQLPLTLRRSSAPSV 175
HY D+ R +YW+ W+ R+++ L +S PS+
Sbjct: 317 HYRTPETHDMGPWTRNLLLYWIPWILRMKRPGHNLTYASLPSL 359
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,574,492
Number of Sequences: 27780
Number of extensions: 127488
Number of successful extensions: 439
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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