Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_J13
(642 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0683 + 10363963-10364037,10364112-10364185,10364312-103644... 184 5e-47
05_03_0610 - 16167557-16167679,16168236-16168418,16169291-161694... 167 9e-42
02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679 72 4e-13
02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168 29 2.4
04_04_1644 + 35015849-35016838 29 3.1
04_01_0483 + 6343599-6343778,6343886-6344011,6344096-6344173,634... 29 4.1
04_01_0480 + 6279576-6279755,6279863-6279988,6280074-6280151,628... 29 4.1
03_02_0488 - 8824980-8825267,8825364-8827775 28 5.5
11_02_0051 + 7776312-7780228,7780627-7780695,7781920-7781979,778... 28 7.2
04_01_0485 + 6389646-6389665,6390063-6390123,6390231-6390356,639... 28 7.2
>03_02_0683 +
10363963-10364037,10364112-10364185,10364312-10364435,
10365047-10365229,10365478-10365600
Length = 192
Score = 184 bits (448), Expect = 5e-47
Identities = 92/189 (48%), Positives = 134/189 (70%), Gaps = 2/189 (1%)
Frame = +2
Query: 29 TMSTKIIKASGAEADSFETSISQALVELET-NSDLKAQLRELYITKAKEIELH-NKKSII 202
T KI K G E FE S++QA +LE N +LK++L++LYI A ++++ N+K+++
Sbjct: 3 TARKKIQKEKGLEPSEFEDSVAQAFFDLENGNQELKSELKDLYINNAVQMDIAGNRKAVV 62
Query: 203 IYVPMPKLKAFXKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSXT 382
I+VP KAF KI +RLVRELEKKFSGK VV V R+I+ P + V +RPR+ T
Sbjct: 63 IHVPYRLRKAFKKIHVRLVRELEKKFSGKDVVIVATRRIVRPPKKGSAV----QRPRTRT 118
Query: 383 LTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLXKNQQTTIEHKVDTFQSVYXKLT 562
LT+V+D ILED+V+PAEIVGKRIR +LDG+++IK+ L ++ E+K++TF +VY +L
Sbjct: 119 LTAVHDGILEDVVYPAEIVGKRIRYRLDGAKVIKIFLDPKERNNTEYKLETFSAVYRRLC 178
Query: 563 GREVTFEFP 589
G++V FE+P
Sbjct: 179 GKDVAFEYP 187
>05_03_0610 -
16167557-16167679,16168236-16168418,16169291-16169414,
16169514-16169626,16169668-16169742
Length = 205
Score = 167 bits (405), Expect = 9e-42
Identities = 84/167 (50%), Positives = 119/167 (71%), Gaps = 2/167 (1%)
Frame = +2
Query: 95 QALVELET-NSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPKLKAFXKIQIRLVREL 268
QA +LE N +LK+ L++LYI A +++L N+K++IIYVP KA+ KI +RLVREL
Sbjct: 38 QAFFDLENGNQELKSDLKDLYINGAVQMDLPGNRKAVIIYVPYRLRKAYKKIHVRLVREL 97
Query: 269 EKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSXTLTSVYDAILEDLVFPAEIVGKR 448
EKKFSGK VV V R+I+ P + V RPR+ TLT+V+D ILED+V+PAEIVGKR
Sbjct: 98 EKKFSGKDVVLVATRRIVRPPKKGSAVV----RPRTRTLTAVHDGILEDVVYPAEIVGKR 153
Query: 449 IRVKLDGSQLIKVHLXKNQQTTIEHKVDTFQSVYXKLTGREVTFEFP 589
+R LDG +++K+ L ++ E+K+DTF SVY +L G++V F++P
Sbjct: 154 VRYHLDGRKIMKIFLDPKERNNTEYKLDTFSSVYRRLCGKDVVFDYP 200
>02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679
Length = 129
Score = 71.7 bits (168), Expect = 4e-13
Identities = 41/98 (41%), Positives = 61/98 (62%)
Frame = +2
Query: 149 LYITKAKEIELHNKKSIIIYVPMPKLKAFXKIQIRLVRELEKKFSGKHVVFVGDRKILPK 328
+Y+ ++ N K ++I+V KAF KI +RLV+ELEKKFSGK VVF R+I+ +
Sbjct: 31 MYVCSQMDVAA-NWKVVVIHVLYHLCKAFKKIHVRLVKELEKKFSGKDVVFDATRRIV-R 88
Query: 329 PSHKTRVANKQKRPRSXTLTSVYDAILEDLVFPAEIVG 442
P +K + PR+ TL +V+D ILED+V ++G
Sbjct: 89 PLNKGSAVH---HPRTRTLITVHDGILEDVVSQLRLLG 123
>02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168
Length = 336
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -1
Query: 363 FCLLATRVLWLGLGRILRSPTKTTCLPLNFFSSSRTSLI 247
F L A+ L L L +L T CLPL FF+ + SL+
Sbjct: 4 FSLFASLSLSLSLSFVLADITDNPCLPLIFFAGNLISLM 42
>04_04_1644 + 35015849-35016838
Length = 329
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -3
Query: 145 PKLGFEVGVGFEFDQRLRDRGLEGIRLSTARFDDLRTHR 29
P L FE+ + +FDQR+ E ++L DL HR
Sbjct: 134 PALAFEINLS-DFDQRVHRHAAESVQLLAEHGVDLAAHR 171
>04_01_0483 +
6343599-6343778,6343886-6344011,6344096-6344173,
6344859-6344984,6345253-6345354,6345425-6345571,
6345861-6345984,6346992-6347152
Length = 347
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/45 (22%), Positives = 23/45 (51%)
Frame = +2
Query: 101 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 235
LVE+ D ++ + Y+ + L++K +++Y+ K+ F
Sbjct: 113 LVEIRAGGDNMDKMYKFYVYPPHRVRLYSKDDVLLYIKEMKISGF 157
>04_01_0480 +
6279576-6279755,6279863-6279988,6280074-6280151,
6280847-6280972,6281244-6281345,6281416-6281490,
6281852-6281975,6283005-6283107,6283546-6283617,
6283662-6283788,6284125-6284180,6284438-6284453
Length = 394
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/45 (24%), Positives = 22/45 (48%)
Frame = +2
Query: 101 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 235
LVE+ D ++ + Y+ + L +K ++IY+ K+ F
Sbjct: 113 LVEIRAGGDNMDKMYKFYVYPPNRVRLFSKDDVLIYIKEMKISGF 157
>03_02_0488 - 8824980-8825267,8825364-8827775
Length = 899
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +2
Query: 50 KASGAEADSFETSISQALVELETNSDL 130
++SG + FET +S A++E+E N+ L
Sbjct: 305 QSSGVTGEVFETLVSSAVMEMERNASL 331
>11_02_0051 + 7776312-7780228,7780627-7780695,7781920-7781979,
7782225-7782324,7782720-7782801,7782928-7782940,
7783621-7783681
Length = 1433
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = -3
Query: 373 AWPLLFVSNTSFVAGLRQDLTVSNKDYMFTTELLFELTDKPDLDLXKGLQF 221
AW L +S+++ ++ L +S KD+M +L FE D+P + F
Sbjct: 1167 AWKSLAISSSAMLS-----LMLSIKDFMLPEKLCFEQYDEPSITFQSSANF 1212
>04_01_0485 +
6389646-6389665,6390063-6390123,6390231-6390356,
6390441-6390518,6391304-6391429,6391630-6391731,
6391802-6391948,6392237-6392360,6393608-6393737,
6393908-6394130
Length = 378
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/45 (22%), Positives = 22/45 (48%)
Frame = +2
Query: 101 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 235
LVE+ D ++ + Y+ + L +K +++Y+ K+ F
Sbjct: 80 LVEIRAGGDNMDKMYKFYVYPPNRVRLFSKDDVLLYIKEMKISGF 124
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,921,816
Number of Sequences: 37544
Number of extensions: 311565
Number of successful extensions: 714
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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