Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_J13
         (642 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical pr...   231   2e-61
AL034393-3|CAA22319.1|  348|Caenorhabditis elegans Hypothetical ...    31   0.93 
AF047661-5|AAU05544.1|  822|Caenorhabditis elegans Hypothetical ...    30   1.6  
AC084159-8|AAK39361.2|  655|Caenorhabditis elegans Hypothetical ...    30   1.6  
U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U41263-5|AAC24427.1|  400|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z78420-2|CAB01710.3|  738|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z66519-4|CAA91373.1|  210|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AL034488-17|CAA22459.2|  316|Caenorhabditis elegans Hypothetical...    27   8.6  
AL034488-16|CAN99708.1|  317|Caenorhabditis elegans Hypothetical...    27   8.6  

>Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical
           protein ZC434.2 protein.
          Length = 194

 Score =  231 bits (566), Expect = 2e-61
 Identities = 107/186 (57%), Positives = 143/186 (76%), Gaps = 1/186 (0%)
 Frame = +2

Query: 41  KIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMP 220
           K++K+ G      E  +SQAL++LETN D+++QL+ELYI   KE+EL NK +IIIYVP+P
Sbjct: 7   KLLKSDGKVVSEIEKQVSQALIDLETNDDVQSQLKELYIVGVKEVELGNKSAIIIYVPVP 66

Query: 221 KLKAFXKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRV-ANKQKRPRSXTLTSVY 397
           +LKAF KI   LVRELEKKF G+ ++ +  R+ILPKP   ++    KQKRPRS TLT+V+
Sbjct: 67  QLKAFHKIHPALVRELEKKFGGRDILILAKRRILPKPQRGSKARPQKQKRPRSRTLTAVH 126

Query: 398 DAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLXKNQQTTIEHKVDTFQSVYXKLTGREVT 577
           DA L++LV+PAE+VG+RIRVKLDG ++ KVHL K+ QT + HK+  F SVY KLTG++VT
Sbjct: 127 DAWLDELVYPAEVVGRRIRVKLDGKKVYKVHLDKSHQTNVGHKIGVFASVYRKLTGKDVT 186

Query: 578 FEFPEP 595
           FEFP+P
Sbjct: 187 FEFPDP 192


>AL034393-3|CAA22319.1|  348|Caenorhabditis elegans Hypothetical
           protein Y18D10A.3 protein.
          Length = 348

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -1

Query: 129 RSELVSSSTSACEIEVSKESASAPLALMIFVLIVDKLYG 13
           R+EL+ S    CE      +A+ P  L  F LIVD L+G
Sbjct: 206 RNELMKSLVVQCETSSIPITATLPTNLQAFPLIVDALFG 244


>AF047661-5|AAU05544.1|  822|Caenorhabditis elegans Hypothetical
           protein M70.4 protein.
          Length = 822

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +1

Query: 13  PVKFVNDEYEDHQSERC*GG-FLRDLDLAGAGRTRNQLRPQSPTSG 147
           PV F + E++D   + C GG  L D DL  AGR  N L    P +G
Sbjct: 291 PVHFFSGEHKDDHPKMCIGGRMLFDKDLNSAGRGLN-LAMLEPKTG 335


>AC084159-8|AAK39361.2|  655|Caenorhabditis elegans Hypothetical
           protein Y73B3A.3 protein.
          Length = 655

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +1

Query: 13  PVKFVNDEYEDHQSERC*GG-FLRDLDLAGAGRTRNQLRPQSPTSG 147
           PV F + E++D   + C GG  L D DL  AGR  N L    P +G
Sbjct: 137 PVHFFSGEHKDDHPKMCIGGRMLFDKDLNSAGRGLN-LAMLEPKTG 181


>U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical
           protein F07F6.4 protein.
          Length = 529

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +3

Query: 105 SNSKPTPTSKPNFGSFTLQKLKKLNYTIRSRSSSMCR 215
           S+SK T      F SF  Q ++K  YT  S SSS  R
Sbjct: 376 SSSKKTTKEDDFFDSFETQPVQKSRYTASSSSSSTSR 412


>U41263-5|AAC24427.1|  400|Caenorhabditis elegans Hypothetical
           protein T19D12.7 protein.
          Length = 400

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -3

Query: 328 LRQDLTVSNKDYMFTTELLFELTDKPDLDLXKGLQFRHRHIDD 200
           L+QD     K +MF    +F   DK  +D  + L+F+  + DD
Sbjct: 167 LQQDFRSFQKVWMFNKTEMFSADDKTFIDSNRSLEFQVLNEDD 209


>Z78420-2|CAB01710.3|  738|Caenorhabditis elegans Hypothetical
           protein F45H11.3 protein.
          Length = 738

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = -3

Query: 127 VGVGFEFDQRLRDRGLEGIRLSTARFDDL 41
           V VGFE   RLRD+GL   +LS   +D L
Sbjct: 522 VEVGFENWIRLRDKGLSHSQLSCQLYDTL 550


>Z66519-4|CAA91373.1|  210|Caenorhabditis elegans Hypothetical
           protein B0334.4 protein.
          Length = 210

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 20/71 (28%), Positives = 35/71 (49%)
 Frame = +2

Query: 368 PRSXTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLXKNQQTTIEHKVDTFQSV 547
           P S     + + +LE  +    IV K++ VK   S L +V    ++ T I+      +SV
Sbjct: 27  PNSHAKHIISEDVLERQITDNTIVTKKLIVKQGSSILKRVPRWISRMTDIQVVPVIEESV 86

Query: 548 YXKLTGREVTF 580
           Y K++ + VT+
Sbjct: 87  YDKVSKKLVTY 97


>AL034488-17|CAA22459.2|  316|Caenorhabditis elegans Hypothetical
           protein Y54G11A.10b protein.
          Length = 316

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/58 (24%), Positives = 26/58 (44%)
 Frame = +2

Query: 170 EIELHNKKSIIIYVPMPKLKAFXKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKT 343
           E E H K   ++   +  +K   +   +L+ E+E++F  + +        LP PS  T
Sbjct: 255 EAECHEKAVDLLKSAVGSVKLVIRYMPKLLDEMERRFERQRIRSTQQSPTLPTPSSST 312


>AL034488-16|CAN99708.1|  317|Caenorhabditis elegans Hypothetical
           protein Y54G11A.10a protein.
          Length = 317

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/58 (24%), Positives = 26/58 (44%)
 Frame = +2

Query: 170 EIELHNKKSIIIYVPMPKLKAFXKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKT 343
           E E H K   ++   +  +K   +   +L+ E+E++F  + +        LP PS  T
Sbjct: 256 EAECHEKAVDLLKSAVGSVKLVIRYMPKLLDEMERRFERQRIRSTQQSPTLPTPSSST 313


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,527,689
Number of Sequences: 27780
Number of extensions: 267593
Number of successful extensions: 719
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)