Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_J12
         (369 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    23   1.3  
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    22   1.7  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   4.0  

>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory receptor
           candidate 49 protein.
          Length = 418

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 204 YLLFENAK*YYLSNNKYLKIK 266
           YL+  N    YL  NKYL +K
Sbjct: 19  YLILSNKNNTYLVLNKYLLVK 39


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 22.2 bits (45), Expect = 1.7
 Identities = 6/18 (33%), Positives = 14/18 (77%)
 Frame = -1

Query: 156 AVCFKFLSLVLXVIIHMY 103
           A+C  F++L++  I+H++
Sbjct: 79  AICCDFIALIVVNIVHVF 96


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.0 bits (42), Expect = 4.0
 Identities = 9/37 (24%), Positives = 19/37 (51%)
 Frame = -1

Query: 195 NLKPFSIDYLHYDAVCFKFLSLVLXVIIHMYMVHNLL 85
           N+K   + + +  +V  +F   V   ++ +Y+ HN L
Sbjct: 224 NIKVLDLSFNNITSVAKQFFRPVELSLMQLYLGHNKL 260


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,567
Number of Sequences: 336
Number of extensions: 545
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7616520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)