Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_J12
         (369 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_1034 - 21865633-21865811,21865838-21865860,21866345-218664...    29   1.5  

>04_03_1034 -
           21865633-21865811,21865838-21865860,21866345-21866433,
           21872484-21872894,21872968-21873284,21873389-21873467,
           21873539-21873903,21874484-21874656,21874824-21874913,
           21875797-21875862,21876615-21876661
          Length = 612

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -1

Query: 192 LKPFSIDYLHYDAVCFKFLSLVLXVIIHMYMVHNLL 85
           L PFS+  L  +A+C K  +LVL V +H  + H L+
Sbjct: 327 LSPFSLSDLE-NAICHKESNLVLLVELHAALFHLLI 361


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,548,120
Number of Sequences: 37544
Number of extensions: 37020
Number of successful extensions: 42
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)